DisGeNET - a database of gene-disease associations

List of associated variants

Lymphoma, Non-Hodgkin, C0024305

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs3813729	C1RL ; C1R	0.925	0.120	12	7089608	missense variant	C/G;T	snv			2
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	272
rs759834365	BDNF-AS ; BDNF	0.448	0.760	11	27658456	missense variant	C/T	snv	1.2E-05		237
rs1695	GSTP1	0.457	0.880	11	67585218	missense variant	A/G	snv	0.34	0.36	188
rs603965	CCND1	0.732	0.440	11	69648142	splice region variant	G/A	snv			14
rs3817198	LSP1	0.790	0.280	11	1887776	intron variant	T/C	snv		0.26	8
rs2509049	H2AX	0.827	0.160	11	119095811	upstream gene variant	C/A;T	snv			6
rs6421571		0.851	0.200	11	118873063	intergenic variant	T/A;C	snv			6
rs9610	IL10RA ; SMIM35	0.882	0.240	11	118001371	3 prime UTR variant	G/A;T	snv	0.51		4
rs11038689	CRY2	0.882	0.160	11	45852713	intron variant	A/G	snv		0.19	3
rs1401417	CRY2	0.882	0.160	11	45858559	intron variant	C/G	snv		0.19	3
rs227060	C11orf65 ; ATM	0.882	0.160	11	108334154	intron variant	C/T	snv		0.27	3
rs7123390	CRY2	0.882	0.160	11	45869867	intron variant	G/A	snv	0.22	0.22	3
rs1785882	CARD16 ; LOC107984381	1.000	0.120	11	105052348	intron variant	A/T	snv		0.45	1
rs1790192	CXCR5	1.000	0.120	11	118886482	non coding transcript exon variant	G/A;C	snv	0.58		1
rs78440425	CXCR5	1.000	0.120	11	118888302	intron variant	G/A	snv		1.1E-02	1
rs80202369		1.000	0.120	11	118873150	intergenic variant	G/A	snv		6.6E-03	1
rs1801157	CXCL12	0.611	0.600	10	44372809	3 prime UTR variant	C/T	snv		0.16	46
rs12917	MGMT ; LOC105378560	0.605	0.480	10	129708019	missense variant	C/T	snv	0.14	0.14	45
rs2308321	MGMT	0.653	0.480	10	129766800	missense variant	A/G	snv	9.3E-02	8.7E-02	29
rs10993994	MSMB	0.763	0.280	10	46046326	5 prime UTR variant	A/G	snv		0.54	15
rs2308327	MGMT	0.790	0.280	10	129766906	missense variant	A/G	snv	9.4E-02	8.7E-02	10
rs2070673	LOC107984284 ; CYP2E1	0.827	0.160	10	133527063	non coding transcript exon variant	A/T	snv		0.67	5
rs606231364	FAS	0.925	0.160	10	89003071	missense variant	G/A	snv			2
rs4934436		1.000	0.120	10	89023563	intergenic variant	C/T	snv		0.60	1