DisGeNET - a database of gene-disease associations

List of shared variants

Malignant neoplasm of stomach, C0024623

Disease: Malignant Neoplasms

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1143623	IL1B	0.677	0.440	2	112838252	upstream gene variant	C/G	snv		0.24	29
rs13428812	DNMT3A	0.827	0.120	2	25269598	intron variant	A/G	snv		0.31	9
rs1550117	DNMT3A	0.790	0.320	2	25343038	upstream gene variant	A/G;T	snv			11
rs2292832	MIR149 ; GPC1 ; LOC100130449	0.605	0.640	2	240456086	non coding transcript exon variant	T/A;C	snv	0.59		46
rs3783553	IL1A	0.667	0.480	2	112774138	3 prime UTR variant	-/TGAA	delins			26
rs3834129	CASP8	0.627	0.560	2	201232809	upstream gene variant	AGTAAG/-	del		0.48	38
rs551060742	MSH2	0.827	0.120	2	47482929	stop gained	C/T	snv	8.4E-05	1.0E-04	7
rs5742909	CTLA4	0.614	0.680	2	203867624	upstream gene variant	C/T	snv		6.7E-02	40
rs6733868	DNMT3A	0.851	0.120	2	25276998	intron variant	C/G	snv		0.50	6
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs779315943	DNMT3A	0.882	0.160	2	25247708	frameshift variant	TTTCC/-	del			5
rs1050450	GPX1	0.623	0.600	3	49357401	missense variant	G/A	snv	0.28	0.30	43
rs1052133	OGG1 ; CAMK1	0.476	0.800	3	9757089	missense variant	C/G	snv	0.27	0.22	147
rs1799864	CCR2	0.572	0.680	3	46357717	missense variant	G/A	snv	0.13	0.12	68
rs1800734	EPM2AIP1 ; MLH1	0.653	0.400	3	36993455	5 prime UTR variant	G/A	snv		0.22	30
rs1801282	PPARG	0.500	0.840	3	12351626	missense variant	C/G	snv	0.11	8.9E-02	131
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs2228000	XPC	0.585	0.560	3	14158387	missense variant	G/A	snv	0.24	0.21	53
rs2293303	CTNNB1	0.827	0.200	3	41239336	synonymous variant	C/T	snv	3.2E-02	1.2E-02	7
rs2607775	XPC ; LSM3	0.807	0.160	3	14178595	5 prime UTR variant	C/G	snv	0.42	0.43	8
rs266729	ADIPOQ	0.637	0.560	3	186841685	upstream gene variant	C/A;G;T	snv			37
rs4135385	CTNNB1	0.742	0.320	3	41237949	non coding transcript exon variant	A/G	snv		0.19	14
rs56250509	MLH1	0.790	0.160	3	37014530	missense variant	T/C	snv	2.0E-05		10
rs746702110	OGG1	0.627	0.480	3	9756778	missense variant	C/T	snv	1.2E-05	2.8E-05	38
rs822395	ADIPOQ	0.776	0.240	3	186849018	intron variant	C/A;G	snv			10