DisGeNET - a database of gene-disease associations

List of shared variants

Malignant neoplasm of stomach, C0024623

Disease: Malignant Neoplasms

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs748491031	EGFR	0.827	0.120	7	55200384	stop gained	C/G;T	snv	1.2E-05		8
rs8126	TNFAIP2	0.807	0.080	14	103137232	3 prime UTR variant	C/T	snv		0.63	8
rs13428812	DNMT3A	0.827	0.120	2	25269598	intron variant	A/G	snv		0.31	9
rs1520220	LINC02456 ; IGF1	0.807	0.280	12	102402744	intron variant	G/C;T	snv		0.76	9
rs1799801	ERCC4	0.807	0.360	16	13948101	synonymous variant	T/C	snv	0.27	0.25	9
rs2227869	ERCC5 ; BIVM-ERCC5	0.790	0.240	13	102862735	missense variant	G/A;C	snv	4.3E-02		9
rs10680577	RAB4B-EGLN2 ; EGLN2	0.776	0.160	19	40798690	intron variant	-/TACT	delins			10
rs2494752	AKT1	0.790	0.120	14	104797271	upstream gene variant	A/G	snv		0.85	10
rs56250509	MLH1	0.790	0.160	3	37014530	missense variant	T/C	snv	2.0E-05		10
rs822395	ADIPOQ	0.776	0.240	3	186849018	intron variant	C/A;G	snv			10
rs1550117	DNMT3A	0.790	0.320	2	25343038	upstream gene variant	A/G;T	snv			11
rs3743073	CHRNA3	0.807	0.120	15	78617197	intron variant	G/T	snv		0.61	11
rs3809865	THCAT158 ; ITGB3	0.790	0.240	17	47311220	3 prime UTR variant	T/A;G	snv			11
rs629367	MIR100HG ; MIRLET7A2	0.776	0.200	11	122146306	intron variant	C/A	snv		0.88	11
rs6682925	C1orf141 ; IL23R	0.776	0.160	1	67165579	intron variant	C/T	snv		0.47	11
rs744154	ERCC4	0.763	0.280	16	13921224	intron variant	G/C	snv		0.23	11
rs12733285	ADIPOR1	0.776	0.120	1	202952912	intron variant	C/T	snv		0.26	12
rs1342387	ADIPOR1	0.776	0.120	1	202945228	intron variant	T/C	snv		0.53	12
rs33388	NR3C1	0.776	0.360	5	143317730	intron variant	A/T	snv		0.53	12
rs13042395	SLC52A3	0.752	0.160	20	773867	intron variant	C/T	snv		5.9E-02	13
rs1859168	HOTTIP	0.790	0.160	7	27202740	non coding transcript exon variant	A/C;G;T	snv			13
rs667282	CHRNA5	0.790	0.120	15	78571130	intron variant	T/C	snv		0.28	13
rs773919809	MGMT	0.763	0.200	10	129766957	missense variant	C/T	snv	2.0E-05		13
rs16999593	DNMT1	0.742	0.240	19	10180505	missense variant	T/C	snv	2.4E-02	9.6E-03	14
rs1799931	NAT2	0.742	0.320	8	18400860	missense variant	G/A	snv	5.8E-02	3.9E-02	14