DisGeNET - a database of gene-disease associations

List of shared variants

Psoriasis, C0033860

Disease: Inflammatory Bowel Diseases

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs11209026	IL23R	0.597	0.680	1	67240275	missense variant	G/A	snv	4.2E-02	4.6E-02	46
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs2274907	ITLN1	0.851	0.200	1	160882036	missense variant	A/G;T	snv	0.66		5
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs2816958	NR5A2	0.827	0.120	1	200132792	intron variant	A/G	snv		0.84	6
rs3024493	IL19 ; IL10	0.776	0.280	1	206770623	intron variant	C/A;T	snv		0.11	9
rs34920465		0.807	0.160	1	22373858	intergenic variant	A/G	snv		0.24	9
rs3766606	PARK7	0.827	0.120	1	7962137	intron variant	G/T	snv		0.22	6
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs4845604	RORC	0.776	0.200	1	151829204	intron variant	G/A;C;T	snv			10
rs61816761	FLG ; FLG-AS1	0.658	0.640	1	152313385	stop gained	G/A;T	snv	9.4E-03; 8.0E-06		43
rs6426833		0.827	0.120	1	19845367	TF binding site variant	G/A	snv		0.52	6
rs7517847	IL23R ; C1orf141	0.689	0.600	1	67215986	intron variant	T/G	snv		0.37	19
rs7530511	IL23R ; C1orf141	0.742	0.400	1	67219704	missense variant	T/A;C	snv	0.88		12
rs1260326	GCKR	0.645	0.600	2	27508073	missense variant	T/C;G	snv	0.63; 4.0E-06	0.68	81
rs13407913	ADCY3	0.827	0.120	2	24874775	intron variant	A/G	snv		0.54	6
rs1990760	IFIH1	0.672	0.480	2	162267541	missense variant	C/T	snv	0.50	0.45	33
rs2111485		0.724	0.280	2	162254026	regulatory region variant	A/G	snv		0.46	17
rs3749171	GPR35	0.807	0.120	2	240630275	missense variant	C/T	snv	0.16; 9.4E-06	0.19	9
rs4676410	GPR35	0.716	0.240	2	240624322	intron variant	G/A	snv		0.26	17
rs7556897		0.807	0.120	2	227795396	intergenic variant	C/G;T	snv			7