DisGeNET - a database of gene-disease associations

List of shared variants

Triglycerides measurement, C0202236

Disease: Serum HDL cholesterol measurement

Source: INFERRED ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs964184	ZPR1	0.716	0.440	11	116778201	3 prime UTR variant	G/C	snv		0.82	38
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	36
rs2075650	TOMM40	0.662	0.360	19	44892362	intron variant	A/G	snv	0.13	0.13	25
rs174547	FADS2 ; FADS1	0.742	0.240	11	61803311	intron variant	T/C	snv		0.28	23
rs1535	FADS2	0.752	0.240	11	61830500	intron variant	A/G	snv		0.31	22
rs629301	CELSR2	0.851	0.120	1	109275684	3 prime UTR variant	G/T	snv		0.74	22
rs247617		0.827	0.160	16	56956804	regulatory region variant	C/A	snv		0.29	20
rs261332	ALDH1A2 ; LIPC-AS1 ; LIPC	0.851	0.120	15	58435126	non coding transcript exon variant	A/G	snv		0.80	20
rs174535	MYRF ; TMEM258	0.776	0.280	11	61783884	missense variant	T/A;C;G	snv	0.38	0.32	19
rs765547		0.827	0.160	8	20008763	intergenic variant	G/A;C;T	snv			18
rs3764261		0.732	0.280	16	56959412	upstream gene variant	C/A	snv		0.31	17
rs102275	TMEM258	0.827	0.320	11	61790331	non coding transcript exon variant	T/C	snv		0.47	16
rs174548	FADS2 ; FADS1	0.851	0.160	11	61803876	5 prime UTR variant	C/G;T	snv			15
rs1532085	ALDH1A2	0.882	0.080	15	58391167	intron variant	A/G;T	snv			12
rs174576	FADS2	0.851	0.200	11	61836038	intron variant	C/A;T	snv			12
rs174577	FADS2	1.000	0.080	11	61837342	intron variant	C/A	snv		0.38	12
rs2070895	LIPC ; ALDH1A2	0.807	0.120	15	58431740	intron variant	G/A	snv		0.33	12
rs651821	APOA5	0.851	0.360	11	116791863	5 prime UTR variant	C/T	snv	0.88	0.89	12
rs673548	APOB	0.925	0.120	2	21014672	intron variant	G/A;T	snv			12
rs10468017	ALDH1A2	0.851	0.120	15	58386313	intron variant	C/T	snv		0.24	11
rs1121980	FTO	0.807	0.240	16	53775335	intron variant	G/A;C	snv			11
rs157580	TOMM40	0.882	0.160	19	44892009	intron variant	G/A	snv		0.69	11
rs174546	FADS1 ; FADS2	0.807	0.200	11	61802358	3 prime UTR variant	C/T	snv		0.28	11
rs998584				6	43790159	downstream gene variant	C/A	snv		0.41	11
rs17231506	CETP	0.851	0.040	16	56960616	upstream gene variant	C/G;T	snv	0.28		10