DisGeNET - a database of gene-disease associations

List of shared variants

Malignant neoplasm of lung, C0242379

Disease: Non-Small Cell Lung Carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1026411	LOC105375751 ; PCAT1	0.827	0.080	8	127014165	intron variant	G/A;C	snv		0.25	5
rs10505477	CASC8 ; PCAT1 ; POU5F1B	0.658	0.400	8	127395198	intron variant	A/G	snv		0.40	31
rs10680577	RAB4B-EGLN2 ; EGLN2	0.776	0.160	19	40798690	intron variant	-/TACT	delins			10
rs10937405	TP63	0.807	0.080	3	189665394	intron variant	C/T	snv		0.38	9
rs11568820	VDR	0.672	0.480	12	47908762	intron variant	C/T	snv		0.38	27
rs11778573	CCN4	0.851	0.080	8	133216687	intron variant	T/G	snv		0.59	4
rs12951053	TP53	0.732	0.160	17	7674089	intron variant	A/C	snv		0.10	14
rs13042395	SLC52A3	0.752	0.160	20	773867	intron variant	C/T	snv		5.9E-02	13
rs13419896	EPAS1	0.776	0.240	2	46329206	intron variant	G/A	snv		0.10	8
rs1544410	VDR	0.542	0.760	12	47846052	intron variant	C/A;G;T	snv			78
rs16893344	CCN4	0.807	0.160	8	133194036	intron variant	C/T	snv		0.29	7
rs17728461	LOC105372988 ; HORMAD2	0.776	0.120	22	30202563	intron variant	C/G	snv		0.25	9
rs1800469	B9D2 ; TGFB1	0.547	0.760	19	41354391	intron variant	A/G	snv		0.69	78
rs1878022	CMKLR1	0.851	0.080	12	108305255	intron variant	C/T	snv		0.70	4
rs2131877	XXYLT1	0.827	0.080	3	195137645	intron variant	G/A	snv		0.20	6
rs2267437	DESI1 ; XRCC6	0.724	0.320	22	41620695	intron variant	C/A;G	snv			19
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv		0.31	48
rs228729	PER3	0.827	0.120	1	7785635	intron variant	T/C	snv	0.69	0.69	5
rs2298881	ERCC1	0.653	0.400	19	45423658	intron variant	C/A;T	snv			25
rs2835267	SETD4 ; LOC100133286	0.827	0.080	21	36074727	intron variant	T/C	snv		0.63	6
rs28360071	XRCC4	0.708	0.240	5	83142293	intron variant	GATGAGGAAACTAACTCTCAGTGGTGTTTA/-	delins		0.48	18
rs2977536	CCN4	0.851	0.080	8	133207034	intron variant	G/C	snv		0.36	4
rs3117582	BAG6 ; APOM	0.716	0.440	6	31652743	intron variant	T/G	snv		7.1E-02	14
rs3743073	CHRNA3	0.807	0.120	15	78617197	intron variant	G/T	snv		0.61	11
rs3805213	NOCT ; ELF2	0.851	0.080	4	139044570	intron variant	C/T	snv		0.23	4