DisGeNET - a database of gene-disease associations

List of shared variants

Dementia, C0497327

Disease: Parkinson Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1044396	CHRNA4	0.742	0.240	20	63349782	missense variant	G/A;C	snv	0.47; 6.1E-05		17
rs104893875	SNCA	0.742	0.120	4	89828170	missense variant	C/T	snv	4.0E-06		13
rs104893877	SNCA	0.614	0.360	4	89828149	missense variant	C/T	snv			59
rs11931074	SNCA ; LOC105377329	0.851	0.080	4	89718364	intron variant	G/A;C;T	snv			7
rs121909330	VCP	0.752	0.200	9	35065364	missense variant	G/A;C;T	snv			11
rs121909334	VCP	0.752	0.200	9	35065255	missense variant	C/T	snv	1.6E-05		10
rs2281983	PITX3	0.851	0.080	10	102231624	missense variant	G/A;C;T	snv	0.62; 8.3E-06		4
rs2306604	TFAM	0.827	0.080	10	58388932	intron variant	A/C;G;T	snv			5
rs33939927	LRRK2	0.708	0.120	12	40310434	missense variant	C/A;G;T	snv	4.0E-06; 1.2E-05		24
rs367543041	TARDBP	0.742	0.200	1	11022553	missense variant	G/A;C	snv	3.0E-05		15
rs3764435	ALDH1A1	0.827	0.120	9	72901960	intron variant	A/C;T	snv			5
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs75932628	LOC105375056 ; TREM2	0.662	0.480	6	41161514	missense variant	C/A;T	snv	6.8E-05; 2.6E-03		28
rs759834365	BDNF-AS ; BDNF	0.448	0.760	11	27658456	missense variant	C/T	snv	1.2E-05		237
rs767543900	MAPT	0.790	0.120	17	45971879	missense variant	A/C;G	snv	4.0E-06		10
rs76763715	GBA	0.658	0.520	1	155235843	missense variant	T/C;G	snv	2.3E-03		35
rs854560	PON1	0.513	0.800	7	95316772	missense variant	A/C;G;N;T	snv	0.29		113
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs1416580204	MOK	0.608	0.720	14	102250837	missense variant	C/T	snv	4.0E-06	7.0E-06	49
rs1289324472	GBA	0.716	0.400	1	155236354	missense variant	T/C	snv		1.4E-05	21
rs201106962	SNCA	0.851	0.080	4	89828156	missense variant	A/C	snv	8.0E-05	7.0E-05	5
rs34637584	LRRK2	0.583	0.480	12	40340400	missense variant	G/A	snv	5.3E-04	3.6E-04	78
rs2230288	GBA	0.776	0.160	1	155236376	missense variant	C/T	snv	1.0E-02	1.0E-02	18
rs2070600	AGER	0.561	0.760	6	32183666	missense variant	C/T	snv	5.3E-02	3.6E-02	82
rs1801474	PRKN	0.851	0.080	6	162201165	missense variant	C/T	snv	7.1E-02	5.3E-02	4