Disease: Malignant tumor of colon
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1045485
CASP8
0.637 0.480 2 201284866 missense variant G/A;C;T snv 4.0E-06; 9.0E-02 34
rs1057941
GBAP1
0.701 0.280 1 155216951 non coding transcript exon variant G/A;T snv 0.46 18
rs11168936
TUBA1C
0.708 0.280 12 49251457 intron variant T/A;C snv 17
rs1130409
APEX1
0.555 0.720 14 20456995 missense variant T/A;C;G snv 4.0E-06; 4.0E-06; 0.42 72
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs115392158
HLA-B
0.708 0.280 6 31347004 intron variant A/G snv 17
rs115707823 0.701 0.320 6 30374976 intergenic variant G/A snv 19
rs11907546 0.708 0.280 20 34131991 upstream gene variant C/A;T snv 17
rs12601991
HNF1B
0.708 0.280 17 37741642 intron variant T/A;G snv 17
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs13254738
PRNCR1 ; CASC19 ; PCAT1
0.807 0.160 8 127092098 non coding transcript exon variant C/A;T snv 8
rs1463038513
APC
0.658 0.440 5 112839511 frameshift variant TAAA/- delins 36
rs147527678 0.708 0.280 6 32699696 intergenic variant G/A;C snv 17
rs147680653 0.708 0.280 6 29785031 intergenic variant A/G snv 17
rs1501299
ADIPOQ ; ADIPOQ-AS1
0.597 0.720 3 186853334 intron variant G/C;T snv 52
rs17879961
CHEK2
0.597 0.480 22 28725099 missense variant A/C;G snv 4.1E-03 53
rs1799977
MLH1
0.662 0.440 3 37012077 missense variant A/C;G;T snv 0.23 28
rs1801278
IRS1
0.637 0.560 2 226795828 missense variant C/G;T snv 4.0E-06; 5.2E-02 38
rs1805192
PPARG
0.510 0.840 3 12379739 missense variant C/G snv 121
rs2077647
ESR1
0.732 0.320 6 151807942 synonymous variant T/A;C snv 8.1E-06; 0.46 16
rs2300206
RALY
0.708 0.280 20 34002002 intron variant G/C;T snv 17
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs25489
XRCC1
0.550 0.720 19 43552260 missense variant C/G;T snv 8.5E-06; 7.1E-02 78
rs266729
ADIPOQ
0.637 0.560 3 186841685 upstream gene variant C/A;G;T snv 37