Disease: Malignant tumor of colon
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2854746
IGFBP3
0.752 0.200 7 45921046 missense variant G/A;C;T snv 0.38 14
rs2974935
MTX1
0.708 0.280 1 155212052 non coding transcript exon variant G/A;C;T snv 17
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs481519
NEK10
0.708 0.280 3 27285723 intron variant C/A;T snv 17
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs7758229
SLC22A3
0.732 0.120 6 160419220 intron variant G/A;T snv 16
rs7799039
LOC105375494
0.649 0.560 7 128238730 upstream gene variant G/A;C snv 33
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs1801155
APC
0.649 0.440 5 112839514 missense variant T/A snv 8.0E-06; 2.0E-03 1.2E-03 42
rs138213197
HOXB13
0.701 0.240 17 48728343 missense variant C/T snv 1.8E-03 1.6E-03 24
rs56084662
FRY
0.701 0.280 13 32295727 3 prime UTR variant G/A snv 3.5E-03 18
rs141752671 0.708 0.280 11 103745837 intron variant A/G snv 5.4E-03 17
rs11571833
BRCA2
0.608 0.360 13 32398489 stop gained A/T snv 6.6E-03 6.0E-03 43
rs11571818
BRCA2
0.708 0.280 13 32394673 intron variant T/C snv 6.6E-03 6.0E-03 17
rs186507655 0.708 0.280 1 1351675 upstream gene variant G/A snv 6.8E-03 17
rs148883465 0.708 0.280 11 103813371 intron variant A/G snv 7.2E-03 17
rs56404467
FRY
0.708 0.280 13 32265853 intron variant G/A snv 1.3E-02 17
rs75316749
LOC107986051
0.701 0.280 3 169043635 intergenic variant A/G snv 4.2E-02 18
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs3742330
DICER1
0.662 0.640 14 95087025 3 prime UTR variant A/G snv 8.7E-02 24
rs1801282
PPARG
0.500 0.840 3 12351626 missense variant C/G snv 0.11 8.9E-02 131
rs1042636
CASR
0.672 0.360 3 122284922 missense variant A/G snv 0.15 9.0E-02 23