|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Our results document the existence of two international MRSA clones: (1) the Iberian clone (ST247:SCCmec IA:PFGE A:ribotype H2), endemic in the hospital and associated to a single multiresistant phenotype; and (2) clone EMRSA-15 (ST22:SCCmec IV:PFGE H-ribotype H7), appearing in the beginning of 2002 and associated with three phenotypes.
|
15383165 |
2004 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
In this study DNA fingerprinting by PFGE was performed on fusidic acid- and rifampicin-resistant isolates from Malaysian hospitals to determine the genetic relatedness of these isolates and their relationship with the endemic MRSA strains.
|
12466411 |
2002 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Variation in the RFLP-PFGE pattern was shown to occur following lysogenization of phage-sensitive MRSA.
|
8789023 |
1996 |
|
Bacteremia
|
0.050 |
Biomarker
|
disease |
BEFREE |
As far as we know, this is the first study which has investigated and compared the serotypes, phylogroups, clonotypes, virotypes, and PFGE profiles of ST131 and non-ST131 clones of bacteraemia ESBL-EC isolates.Of the 2,427 <i>E. coli</i> bloodstream isolates, 96 (4.0%) were positive for ESBL production: 40 for CTX-M-15, 36 for CTX-M-14, eight for CTX-M-1, four for CTX-M-9, CTX-M-32, and SHV-12.
|
31379759 |
2019 |
|
Bacteremia
|
0.050 |
GeneticVariation
|
disease |
BEFREE |
Those isolates causing bacteremia in two infants clustered in PFGE pattern 3.
|
31413826 |
2019 |
|
Bacteremia
|
0.050 |
Biomarker
|
disease |
BEFREE |
For a 1-year period, all non-duplicate P. aeruginosa isolated from bacteremia and pulmonary infections in ten adult ICUs of six French university hospitals were characterized by antimicrobial susceptibility testing and genotyping (MLST and PFGE).
|
30826996 |
2019 |
|
Multiple Chronic Conditions
|
0.050 |
Biomarker
|
disease |
BEFREE |
Bacterial clonal relatedness was established using REP-PCR, PFGE, and multi-locus sequence typing (MLST).
|
30677535 |
2019 |
|
Multiple Chronic Conditions
|
0.050 |
Biomarker
|
disease |
BEFREE |
CRISPR-multi-locus virulence sequence typing (CRISPR-MVLST) was performed to type 92 S. Typhimurium strains isolated from humans and food sources between 1983 and 2013 in Brazil and assess the suitability of this methodology comparing it with PFGE already used for subtyping the same strains.
|
28034696 |
2017 |
|
Bacteremia
|
0.050 |
Biomarker
|
disease |
BEFREE |
Lactobacillus bacteremia was associated with candidemia and occurred while the patient was receiving a probiotic formulation containing the same strain (as determined by PFGE typing), and was being concomitantly treated with i.v. vancomycin, to which the Lactobacillus strain was resistant.
|
26024568 |
2015 |
|
Cystic Fibrosis
|
0.050 |
Biomarker
|
disease |
BEFREE |
Using a series of alternative genotyping approaches [PFGE, random amplification of polymorphic DNA (RAPD), variable number of tandem repeats (VNTR) and multilocus sequence typing (MLST)], the six CF clone D isolates and eight previously identified clone D isolates associated with infections leading to keratitis were compared.
|
23105019 |
2013 |
|
Cystic Fibrosis
|
0.050 |
Biomarker
|
disease |
BEFREE |
P. aeruginosa isolates (313 isolates from 142 sputum samples and 53 throat swabs) from 68 CF patients were examined using PFGE to explore the diversity of P. aeruginosa isolates among CF patients in a Dublin paediatric hospital.
|
21921114 |
2012 |
|
Multiple Chronic Conditions
|
0.050 |
Biomarker
|
disease |
BEFREE |
Isolates were characterized for antibiotic susceptibility, mec gene presence, PFGE, spa type, SCCmec-type, presence of PVL genes and multi-locus-sequence-type (MLST).
|
22916171 |
2012 |
|
Multiple Chronic Conditions
|
0.050 |
Biomarker
|
disease |
BEFREE |
XbaI-digested PFGE patterns generated two related clusters implicated in the dissemination of multi-drug resistance amongst Salmonella Stanley isolates.
|
21061061 |
2011 |
|
Bacteremia
|
0.050 |
Biomarker
|
disease |
BEFREE |
MLST and PFGE analyses showed that ST11 was dominant in ESBL-producing K. pneumoniae isolates causing UTI (57.4 %) and in those causing bacteraemia (70.0 %) and has been prevalent in Korean hospitals.
|
20360396 |
2010 |
|
Cystic Fibrosis
|
0.050 |
Biomarker
|
disease |
BEFREE |
Linked rep-PCR profiles were observed for isolates recovered from a same family of cystic fibrosis (CF) patients, for the etiological agents of clustered cases of nosocomial infections, and for some isolates recovered from a same hospital room. rep-PCR and pulsed-field gel electrophoresis SpeI restricted genomic DNA (PFGE-SpeI) profiles were compared.
|
19449044 |
2009 |
|
Multiple Chronic Conditions
|
0.050 |
Biomarker
|
disease |
BEFREE |
In total, 301 non-repetitive MRSA clinical isolates, recovered from 19 Italian hospitals between 1990 and 2007 were selected and analyzed for their antibiotic resistance, typed by PFGE and SCCmec, grouped into clonal-types and further characterized using Multi Locus Sequence Typing (MLST).
|
19552801 |
2009 |
|
Cystic Fibrosis
|
0.050 |
Biomarker
|
disease |
BEFREE |
This study investigated the PFGE genetic pattern and antimicrobial resistance profile of 42 A. xylosoxidans isolates obtained over 4 years from the respiratory tract of 22 CF patients.
|
19024606 |
2008 |
|
Cystic Fibrosis
|
0.050 |
Biomarker
|
disease |
BEFREE |
Using PFGE mapping and the three jump clones, we found it possible to orient D7S8 on the chromosome and, by linkage analysis, to further narrow the CF region by 100 kb.
|
2565081 |
1989 |
|
Shigella Infections
|
0.040 |
Biomarker
|
group |
BEFREE |
The aim of this study was to analyze the epidemiological relatedness of Shigella strains isolated from children during one year period by PFGE method and to investigate antimicrobial resistance determinants and cassettes among Shigella species.The occurrence of Shigella spp. in the present study was 1.32% during the study period and the majority of cases (56 (80%)) were occurred during autumn while Shigella sonnei was the most prevalent species identified.
|
26117443 |
2015 |
|
Shigella Infections
|
0.040 |
GeneticVariation
|
group |
BEFREE |
In this study, characterization of those provisional serovars of Shigella was performed with respect to their antimicrobial resistance, plasmids, virulence genes and PFGE profiles.
|
25261061 |
2014 |
|
Shigella Infections
|
0.040 |
Biomarker
|
group |
BEFREE |
Shigella isolates producing extended-spectrum β-lactamases (ESBLs) or resistance to ciprofloxacin were further characterized by PFGE to determine the genetic relatedness.
|
21859815 |
2011 |
|
Shigella Infections
|
0.040 |
Biomarker
|
group |
BEFREE |
Six of the isolates were identical in DNA pattern by PFGE with the seventh exhibiting a closely related pattern; both patterns were distinguishable from all other Shigella and Escherichia coli patterns.
|
17446289 |
2007 |
|
Invasive Streptococcus pneumoniae disease
|
0.020 |
Biomarker
|
disease |
BEFREE |
All tested strains demonstrated five MLVA patterns and two PFGE patterns.<b>Conclusion.</b> We determined that the 2016-2017 outbreak of IPD in Chiba Prefecture was caused by clonally related isolates of serotype 12F.
|
31347997 |
2019 |
|
Urinary tract infection
|
0.020 |
GeneticVariation
|
group |
BEFREE |
Real time PCR of csgD and csgA genes of 50 E. cloacae complex in relation to PFGE and hsp60 genotypes showed that all the genetic clusters are not equally involved in pathogenesis of urinary tract infections.
|
27354208 |
2016 |
|
Invasive Streptococcus pneumoniae disease
|
0.020 |
Biomarker
|
disease |
BEFREE |
The purpose of this study was to evaluate the bacterial genotypes (by PFGE and MLST), clinical characteristics of patients (from review of medical records) and antimicrobial susceptibility of serogroup 20 isolates which were recovered from patients with invasive pneumococcal disease (IPD) from 2007 to 2012.
|
27527077 |
2016 |