|
Amino acids measurement
|
0.100 |
GeneticVariation
|
group |
GWASCAT |
Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.
|
30659259 |
2019 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
Based on these results, six strains of S. aureus were identified: two MRSA strains (t16708/ST3862/PFGE-A, t16709/ST3862/PFGE-C) and one methicillin-sensitive S. aureus (t8397/ST3884/PFGE-D) were characterized for the first time in this study; strains belonging to spa types t189 and t4167 have been identified in primates in previous studies.
|
30481118 |
2019 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
The single MRSA belonged to the EMRSA-15 clone (PFGE D, ST15-SCCmec IVh, and spa type t790).
|
31332610 |
2019 |
|
Methionine measurement
|
0.100 |
GeneticVariation
|
phenotype |
GWASCAT |
Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.
|
30659259 |
2019 |
|
Serine measurement
|
0.100 |
GeneticVariation
|
phenotype |
GWASCAT |
Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.
|
30659259 |
2019 |
|
Threonine measurement
|
0.100 |
GeneticVariation
|
phenotype |
GWASCAT |
Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.
|
30659259 |
2019 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
PFGE analysis revealed 22 different patterns, with four major patterns that accounted for 53.4% of all MRSA isolates, and seven sporadic patterns.
|
25858549 |
2015 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
We compared WGS to PFGE for investigating presumptive outbreaks involving three important pathogens: vancomycin-resistant Enterococcus faecium (n=19), methicillin-resistant Staphylococcus aureus (n=17), and Acinetobacter baumannii (n=15).
|
25631811 |
2015 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
The two Community-associated (CA)-MRSA belonged to ST5 but were unrelated based on the PFGE results.
|
24990470 |
2014 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
The first MRSA strain with a USA300 PFGE pattern was isolated in 2001 from a patient visiting from the USA.
|
25200859 |
2014 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
MRSA isolates belonged to three clonal complexes: CC8 (PFGE type B-ST8-t064/t451-IVg/V), CC88 (PFGE E-ST88-t186/t786-IVa), and CC5 (PFGE K-ST5-t105-IVa/PFGE K-ST105-t002-II).
|
24024594 |
2014 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
All isolates were characterized by spa typing, with selective PFGE and MLST to relate spa types with major MRSA clones.
|
23637976 |
2013 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Two of these persons lived on farms with livestock positive for mecC-carrying MRSA, sharing spa type (t843), MLVA (MT429) and PFGE pattern with the human isolates.
|
23078039 |
2013 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Seventeen human and animal MRSA-ST398 isolates showed indistinguishable PFGE patterns (A1-spa-t011 or B2-spa-t108) and similar phenotypic-genotypic characteristics, including the presence of the lnu(A) gene, associated with lincomycin resistance.
|
21682806 |
2011 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
Of the hospital-acquired MRSA cases, 14/28 (50%) were SCCmec type IV (3 PFGE types), 13 were SCCmec type III (46%), and one had an indeterminate type.
|
22189732 |
2011 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
Furthermore, possible transmission among veterinarians and their family members was investigated and an outbreak of ST398 MRSA in a residential care facility was confirmed with the Cfr9I PFGE.
|
20144202 |
2010 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
The epidemiology of MRSA has been investigated by PFGE.
|
19588195 |
2009 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Methicillin-resistant Staphylococcus aureus (MRSA) PFGE strain type USA300 (multilocus sequence type 8, clonal complex 8, staphylococcal cassette chromosome mec type IV) was first reported in the USA as a cause of skin and soft issue infection among college football players in Pennsylvania and among prisoners in Missouri in 2000.
|
19608582 |
2009 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Antibiogram profile and PFGE were also used to characterize MRSA isolates (n = 601).
|
18755697 |
2008 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
Slight variations in the SmaI-PFGE pattern of the clinical MRSA isolates belonging to this clone were traced back to differences in the sizes of the SCCmec J2 regions and/or to a 6.4-kb deletion extending from ISS* to the right end ISS.
|
17605795 |
2007 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
GeneticVariation
|
disease |
BEFREE |
PFGE demonstrated that 39 (34%) of the 116 isolates were the MRSA USA300 genotype; 34 (29%) were USA100; 42 (36%) were USA500; and 1 (1%) was USA800.
|
16447110 |
2006 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
The combined use of spa and PFGE typing allowed better discrimination than each method used individually, and provided useful information on MRSA transmission between animal and human individuals.
|
17030517 |
2006 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
In addition, PFGE was performed to type the MRSA and grouped the tested 30 MRSA isolates with qacA/B into 21 PFGE types.
|
15888465 |
2005 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
PFGE analysis revealed that most MRSA isolates were indistinguishable (56%) or closely related (26%) to EMRSA-15, one of the two epidemic MRSA strains dominant in UK hospitals.
|
16141276 |
2005 |
|
MRSA - Methicillin resistant Staphylococcus aureus infection
|
0.100 |
Biomarker
|
disease |
BEFREE |
Our data suggest that a typing method based on RAPD combined with HVR-PCR may be useful to compare MRSA isolated in a hospital environment, whereas PFGE may be used for further analysis.
|
15782627 |
2005 |