LUM, lumican, 4060

N. diseases: 123; N. variants: 6
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs11478
rs11478
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0005890
Disease:
Body Height
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE Chinese lumican rs3759223 C allele carriers may be at reduced risk of high myopia. 24516061 2014
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE The results indicated that rs3759223 polymorphism was associated with high myopia under a recessive model (OR = 1.71, 95%CI 1.04-2.81). 24956166 2014
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE This meta-analysis has suggested that there is a lack of association of the rs3759223 polymorphism with high myopia risk. 24927138 2014
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE This meta-analysis showed the evidence that SNP rs3759223 may affect individual susceptibility to high myopia in the Chinese population. 24061151 2013
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE Genetic variation in the regulatory domains of the lumican gene, where both rs3759223 and rs3741834 are located, are associated with high myopia susceptibility among the Han Chinese, making this region worthy of further investigation. 19616852 2009
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.060 GeneticVariation BEFREE Our results indicate that an SNP (rs3759223), which is located in the promoter region of the lumican gene, may be worth further investigation to determine its association with development of high myopia. 16902402 2006
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0027092
Disease:
Myopia
0.030 GeneticVariation BEFREE Meta-analyses showed no association between rs3759223 polymorphism and high myopia susceptibility in all genetic models (CC vs. TT, OR = 1.089; 95% CI, 0.690 to 1.718; CT vs. TT, OR = 0.865; 95% CI, 0.646 to 1.157; CC + CT vs. TT, OR = 1.202; 95% CI, 0.730 to 1.980; CC vs. CT + TT, OR = 0.914; 95% CI, 0.771 to 1.083) and no significance in subgroup analyses according to the definition of high myopia (based on more myopic than -6.00 diopters vs. not based on more myopic than -6.00 diopters). 24927138 2014
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0027092
Disease:
Myopia
0.030 GeneticVariation BEFREE Pooled relative ratios (RRs) and 95% confidence interval (CI) were used to assess the strength of the associations between SNP rs3759223 and myopia. 24061151 2013
dbSNP: rs3759223
rs3759223
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0027092
Disease:
Myopia
0.030 GeneticVariation BEFREE Haplotype-specific tests showed that the C-C and T-C haplotypes were associated significantly with high myopia, with odds ratios (95% confidence intervals) of 19.32 (2.55-146.54) and 0.69 (0.46-1.04), respectively. rs3759223 and rs3741834 are in a putative regulatory element of the lumican gene, which influences fibrillogenesis of scleral collagen fibers and the development of myopia. 19616852 2009
dbSNP: rs3759222
rs3759222
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE Four studies (1024 cases and 1163 controls) were identified for the analysis of the association between rs3759222 polymorphism and high myopia. 24956166 2014
dbSNP: rs3741834
rs3741834
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0027092
Disease:
Myopia
0.010 GeneticVariation BEFREE Haplotype-specific tests showed that the C-C and T-C haplotypes were associated significantly with high myopia, with odds ratios (95% confidence intervals) of 19.32 (2.55-146.54) and 0.69 (0.46-1.04), respectively. rs3759223 and rs3741834 are in a putative regulatory element of the lumican gene, which influences fibrillogenesis of scleral collagen fibers and the development of myopia. 19616852 2009
dbSNP: rs3741834
rs3741834
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE Genetic variation in the regulatory domains of the lumican gene, where both rs3759223 and rs3741834 are located, are associated with high myopia susceptibility among the Han Chinese, making this region worthy of further investigation. 19616852 2009
dbSNP: rs2268578
rs2268578
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0678222
Disease:
Breast Carcinoma
0.010 GeneticVariation BEFREE Although LUM rs2268578 was associated with breast cancer in the Mayo Clinic study, particularly estrogen receptor-positive breast cancer, weaker and modest associations were observed in the SEARCH sample. 19036156 2008
dbSNP: rs2268578
rs2268578
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.010 GeneticVariation BEFREE Although LUM rs2268578 was associated with breast cancer in the Mayo Clinic study, particularly estrogen receptor-positive breast cancer, weaker and modest associations were observed in the SEARCH sample. 19036156 2008
dbSNP: rs2268578
rs2268578
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C2938924
Disease:
Oestrogen receptor positive breast cancer
0.010 GeneticVariation BEFREE Although LUM rs2268578 was associated with breast cancer in the Mayo Clinic study, particularly estrogen receptor-positive breast cancer, weaker and modest associations were observed in the SEARCH sample. 19036156 2008
dbSNP: rs747899454
rs747899454
Entrez Id: 4060
Gene Symbol: LUM
LUM
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE Five changes were detected in opticin, Thr177Arg, Arg229His, Arg325Trp, Gly329Ser, and Arg330His, and all but one (Arg229His) were shown to cosegregate with high myopia in families with incomplete penetrance. 17117407 2007