rs1544410, VDR

N. diseases: 78
Source: BEFREE ×
Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
Diabetes Mellitus, Non-Insulin-Dependent
0.040 GeneticVariation BEFREE Patient-control haplotype analyses using the SHEsis online haplotype analysis software showed that the G allele frequency of rs1544410 in the T2DM group was higher than that in the control group [odds ratio (OR) = 1.738, 95% confidence interval (CI) = 1.055-2.865], suggesting that the G allele is a risk factor of T2DM in the Chinese Han population. 25501168 2014
Diabetes Mellitus, Non-Insulin-Dependent
0.040 GeneticVariation BEFREE Results showed T2DM to be significantly associated with the VDR Taq1 (rs731236-AG) and Bsm-I (rs1544410-CT) genotypes, and the VDR rs1544410-T allele. 22219324 2012
Tuberculosis
CUI: C0041296
Disease: Tuberculosis
0.030 GeneticVariation BEFREE Our meta-analysis suggested that VDR rs1544410, rs2228570 and rs731236 variants might serve as genetic biomarkers of TB in certain populations. 30822458 2019
Tuberculosis
CUI: C0041296
Disease: Tuberculosis
0.030 GeneticVariation BEFREE Pooled overall analyses suggested that VDR rs1544410 (dominant model: P = 0.02; allele model: P = 0.03) and rs731236 (dominant model: P = 0.04; recessive model: P = 0.02; allele model: P = 0.01) variants were significantly associated with TB. 30987490 2019
Obesity
CUI: C0028754
Disease: Obesity
0.030 GeneticVariation BEFREE The aim of this study was to investigate the association of candidate gene single nucleotide polymorphisms (SNPs), namely FTO (rs9939609) and VDR (rs1544410), with obesity in the UAE population. 29343214 2018
Obesity
CUI: C0028754
Disease: Obesity
0.030 GeneticVariation BEFREE The rs1544410 or BsmI single nucleotide polymorphism (SNP) in the intronic region of the VDR gene has been previously associated with vitamin D levels, obesity and insulin resistance. 28617856 2017
Tuberculosis
CUI: C0041296
Disease: Tuberculosis
0.030 GeneticVariation BEFREE Analyses were conducted to test for main effects of vitamin D status and SNPs in VDR (rs731236, rs2228570 and rs1544410), DBP (rs7041 and rs4588) and CYP2R1 (rs2060793, rs10500804 and rs10766197) on susceptibility to TB, and to investigate whether these SNPs modify the association between vitamin D status and disease susceptibility. 27160686 2016
Obesity
CUI: C0028754
Disease: Obesity
0.030 GeneticVariation BEFREE Results showed that the VDR SNPs rs731236 (G) (TaqI) and rs1544410 (T) (Bsm-I) minor allele polymorphisms are significantly more frequent in obese individuals (p = 0.009, β = 0.086 and p = 0.028, β = 0.072, respectively). 25020064 2014
Asthma
CUI: C0004096
Disease: Asthma
0.020 GeneticVariation BEFREE In subgroup analyses by type of disease, we confirmed positive results for rs1544410 BsmI polymorphism in both asthma and atopic dermatitis, and for rs731236 TaqI polymorphism in atopic dermatitis. 31752548 2020
Dermatitis, Atopic
CUI: C0011615
Disease: Dermatitis, Atopic
0.020 GeneticVariation BEFREE In subgroup analyses by type of disease, we confirmed positive results for rs1544410 BsmI polymorphism in both asthma and atopic dermatitis, and for rs731236 TaqI polymorphism in atopic dermatitis. 31752548 2020
Asthma
CUI: C0004096
Disease: Asthma
0.020 GeneticVariation BEFREE This meta-analysis was performed to identify whether VDR gene polymorphisms (FokI (rs2228570) or TaqI (rs731236) or BsmI (rs1544410) or ApaI (rs7975232)) play a role in the risk of asthma. 31654764 2020
Eczema
CUI: C0013595
Disease: Eczema
0.020 GeneticVariation BEFREE In subgroup analyses by type of disease, we confirmed positive results for rs1544410 BsmI polymorphism in both asthma and atopic dermatitis, and for rs731236 TaqI polymorphism in atopic dermatitis. 31752548 2020
Tuberculosis, Pulmonary
CUI: C0041327
Disease: Tuberculosis, Pulmonary
0.020 GeneticVariation BEFREE Vitamin D receptor ApaI (rs7975232), BsmI (rs1544410), Fok1 (rs2228570), and TaqI (rs731236) gene polymorphisms and susceptibility to pulmonary tuberculosis in an Iranian population: A systematic review and meta-analysis. 31740220 2019
Metabolic Syndrome X
CUI: C0524620
Disease: Metabolic Syndrome X
0.020 GeneticVariation BEFREE The SNPs rs1544410 and rs7975232 were mainly implicated in the increased risk of MetS in the Thai population. 30045441 2019
Nephrolithiasis
CUI: C0392525
Disease: Nephrolithiasis
0.020 GeneticVariation BEFREE After analyzing 23 publications, we observed that BsmI polymorphism (rs1544410) has a protective association against nephrolithiasis (Allelic model: OR = 0.84, CI 95% 0.73-0.96, Z p-value 0.015; homozygous model: OR = 0.72, CI 95% 0.54-0.97, Z p-value 0.033). 31212049 2019
Parkinson Disease
CUI: C0030567
Disease: Parkinson Disease
0.020 GeneticVariation BEFREE No significant association was found between rs7975232 or rs1544410 and PD. 30763651 2019
Coronary Artery Disease
CUI: C1956346
Disease: Coronary Artery Disease
0.020 GeneticVariation BEFREE The VDR rs1544410G>A gene is a strong risk factor for CAD (OR = 1.28, p = 0.002) and the dominant genotype (T/G+G/G) of VDBP 7041 T>G SNP plays a protective role (OR = 0.67, p = 0.003) in AMVC development in studied population. 31359379 2019
Diabetes Mellitus, Insulin-Dependent
0.020 GeneticVariation BEFREE In contrast, the VDR gene ApaI (G > T, rs7975232) and BsmI (A > G, rs1544410) polymorphisms did not show association with T1DM. 30845908 2019
Kidney Calculi
CUI: C0022650
Disease: Kidney Calculi
0.020 GeneticVariation BEFREE After analyzing 23 publications, we observed that BsmI polymorphism (rs1544410) has a protective association against nephrolithiasis (Allelic model: OR = 0.84, CI 95% 0.73-0.96, Z p-value 0.015; homozygous model: OR = 0.72, CI 95% 0.54-0.97, Z p-value 0.033). 31212049 2019
Malignant neoplasm of prostate
CUI: C0376358
Disease: Malignant neoplasm of prostate
0.020 GeneticVariation BEFREE The association between vitamin D receptor gene <i>Bsm I</i> (rs1544410) polymorphism and prostate cancer (PCa) risk has been investigated by numerous previous studies, which yielded inconsistent results. 30122987 2018
Graves Disease
CUI: C0018213
Disease: Graves Disease
0.020 GeneticVariation BEFREE Two SNPs in VDR were associated with GD: rs10735810 (OR = 1.36, 95% CI: 1.02-1.36, <i>p</i> = 0.02) and rs1544410 (OR = 1.47, 95% CI: 1.03-1.47, <i>p</i> = 0.02). 29594051 2018
Osteoporosis, Postmenopausal
CUI: C0029458
Disease: Osteoporosis, Postmenopausal
0.020 GeneticVariation BEFREE For the bearers of C-G-C haplotype (consisting of rs7975232, rs1544410, and rs731236 unfavorable alleles), the risk of PMO was significantly higher (OR = 4.7, 95% CI 2.8-8.1, <i>p</i> < 0.0001) compared to controls. 29922235 2018
Prostate carcinoma
CUI: C0600139
Disease: Prostate carcinoma
0.020 GeneticVariation BEFREE The association between vitamin D receptor gene <i>Bsm I</i> (rs1544410) polymorphism and prostate cancer (PCa) risk has been investigated by numerous previous studies, which yielded inconsistent results. 30122987 2018
Carcinoma, Ovarian Epithelial
CUI: C4721610
Disease: Carcinoma, Ovarian Epithelial
0.020 GeneticVariation BEFREE Moreover, for detecting clinical risk of OC, heterozygote models with the rs1544410 (BsmI) polymorphism is likely the best genetic model for detecting the risk of OC in Caucasian patients. 30059751 2018
Metabolic Syndrome X
CUI: C0524620
Disease: Metabolic Syndrome X
0.020 GeneticVariation BEFREE However VDR gene polymorphisms did not seem to be associated with an increased risk of MS. <b>Conclusions:</b> Vitamin D deficiency, rs7975232, and rs1544410 VDR gene variants are associated with MS parameters in Russian middle-aged women. 30166978 2018