Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 240
Gene Symbol: ALOX5
ALOX5
0.310 Biomarker phenotype CTD_human Colonic polyps, cancer, and normal mucosa were evaluated for 5-LOX expression by immunohistochemistry. 18927292 2008
Entrez Id: 240
Gene Symbol: ALOX5
ALOX5
0.310 AlteredExpression phenotype BEFREE The purpose of this study was to evaluate the expression of 5-LOX in colonic polyps and cancer and the effect of 5-LOX inhibition on colon cancer cell proliferation. 18927292 2008
Entrez Id: 54822
Gene Symbol: TRPM7
TRPM7
0.300 Biomarker phenotype CTD_human The relation of magnesium and calcium intakes and a genetic polymorphism in the magnesium transporter to colorectal neoplasia risk. 17823441 2007
Entrez Id: 3611
Gene Symbol: ILK
ILK
0.300 Biomarker phenotype CTD_human Dysregulation of integrin-linked kinase (ILK) signaling in colonic polyposis. 11593435 2001
Entrez Id: 3066
Gene Symbol: HDAC2
HDAC2
0.200 Therapeutic phenotype RGD Chemopreventive effects of an HDAC2-selective inhibitor on rat colon carcinogenesis and APCmin/+ mouse intestinal tumorigenesis. 24218540 2014
Entrez Id: 5395
Gene Symbol: PMS2
PMS2
0.110 GeneticVariation phenotype LHGDN A new cancer syndrome caused by biallelic mutations in the mismatch repair genes, including PMS2, is now emerging and is characterized by café-au-lait macules, colonic polyps and a distinctive tumor spectrum. 18273873 2008
Entrez Id: 5395
Gene Symbol: PMS2
PMS2
0.110 GeneticVariation phenotype CLINVAR
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.100 CausalMutation phenotype CLINVAR
Entrez Id: 324
Gene Symbol: APC
APC
0.050 Biomarker phenotype BEFREE While A20(FL/FL) villin-Cre mice exhibit uninflamed intestines without polyps, A20(FL/FL) villin-Cre APC(min/+) mice contain far greater numbers and larger colonic polyps than control APC(min) mice. 23671587 2013
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 AlteredExpression phenotype BEFREE A tumor suppressor function is suggested by evidence that CDX2 levels are decreased in human colon cancer specimens and that an inactivating mutation of Cdx2 in Apc(Δ716) mice markedly increases the incidence of colonic polyps. 21224344 2011
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 GeneticVariation phenotype BEFREE CDX2 heterozygous mutant mice develop colonic polyps, and loss of CDX2 expression is seen in a subset of colon carcinomas in humans. 20699370 2010
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 GeneticVariation phenotype BEFREE This is the first PPARG germline mutation associated with dyslipidemia and colonic polyp formation that can progress to full-blown adenocarcinoma. 20123124 2010
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 Biomarker phenotype BEFREE PPARgamma hetero-deficiency promoted the induction of ACF, but had no effect on the incidence of colonic polyps. 18391483 2008
Entrez Id: 324
Gene Symbol: APC
APC
0.050 GeneticVariation phenotype BEFREE Whereas the number of colonic polyps has been linked to the APC gene mutation, possible genotype-phenotype correlations largely remain to be defined for the extracolonic manifestations. 19036155 2008
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 AlteredExpression phenotype BEFREE Mice heterozygous for Cdx2 inactivation develop colonic polyps with epithelial cells showing gastric or squamous differentiation. 15825077 2005
Entrez Id: 324
Gene Symbol: APC
APC
0.050 GeneticVariation phenotype BEFREE From this descriptive study, it seems that the short-term risk for colonic polyps in I1307K APC mutation is low, primarily affecting patients with previously diagnosed colon tumors. 15733272 2005
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 Biomarker phenotype BEFREE Here we show that the colonic polyp number is about six times higher in Apc+/Delta716 Cdx2+/- compound mutant mice. 14625550 2003
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 AlteredExpression phenotype BEFREE In this study we evaluated the expression of PPARgamma in the biopsy samples of the polyps and outside polyps colonic mucosa from seven patients with active, untreated acromegaly, 11 with cured disease, and 15 controls. 12915690 2003
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 GeneticVariation phenotype BEFREE In this study the expression and mutations of the PPARgamma gene in the colonic polyps and mucosa outside polyps were investigated in 10 acromegalic and 17 non-acromegalic patients. 15008240 2003
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 AlteredExpression phenotype BEFREE In conclusion, patients with active Acro have a reduced expression of PPARgamma in the colonic mucosa, which appears be related to the increased serum IGF-I levels and might lead to an increased prevalence of colonic polyps. 11994396 2002
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 GeneticVariation phenotype BEFREE Inactivation of one Cdx2 allele predisposes mice to develop colon polyps, and loss of CDX2 expression is a feature of some poorly differentiated colon carcinomas in humans. 12404231 2002
Entrez Id: 324
Gene Symbol: APC
APC
0.050 GeneticVariation phenotype BEFREE We have previously suggested that the APC protein might modulate the frequency of mutations, such as loss of heterozygosity (LOH), necessary for colon polyp formation. 9843214 1998
Entrez Id: 324
Gene Symbol: APC
APC
0.050 Biomarker phenotype BEFREE In the case of colon cancer, we were fortunate in identifying an inherited tumor suppressor gene, the APC gene, that plays a major etiologic role in both the inherited disease, familial adenomatous polyposis (FAP), and in sporadic colon polyps. 9296069 1997
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.030 Biomarker phenotype BEFREE Investigation of Insulin-Like Growth Factor-1 (IGF-1), P53, and Wilms' Tumor 1 (WT1) Expression Levels in the Colon Polyp Subtypes in Colon Cancer. 31341157 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.030 AlteredExpression phenotype BEFREE The distribution of TP53 genotypes did not differ between APC<sup>1311/+</sup> pigs with low (LP) and high (HP) number of colon polyps. p53 mRNA expression was analysed in distally located normal mucosa samples of wild-type pigs, APC<sup>1311/+</sup> LP and HP pigs, and also in distally located polyp samples histologically classified as low-grade (LG-IEN) and high-grade intraepithelial dysplastic (HG-IEN) from APC<sup>1311/+</sup> pigs. p53 mRNA expression was found to be significantly elevated in HG-IEN compared to LG-IEN samples (p = 0.012), suggesting a role for p53 in the early precancerous stages of polyp development. 30145695 2018