Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.040 AlteredExpression disease BEFREE Therefore, peripheral CVID memory B cells are prompted to die from apoptosis due to a constitutive Bcl-2 family protein imbalance and defective protection from activation-induced apoptosis. 30464201 2018
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.040 AlteredExpression disease BEFREE We also assessed the expression of the anti-apoptotic molecule BCL2 mRNA levels in B-cells by real-time PCR in CVID patients compared with HDs. 28925897 2017
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.020 GeneticVariation disease BEFREE Common-variable immunodeficiency-related lymphomas associate with mutations and rearrangements of BCL-6: pathogenetic and histogenetic implications. 10923927 2000
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.020 GeneticVariation disease BEFREE Our finding of a normal mutation frequency of the BCL-6 gene in two hypomutated CVID point to a defect of the Ig targeting of hypermutation machinery in these cases. 11035117 2000
Entrez Id: 613
Gene Symbol: BCR
BCR
0.020 Biomarker disease BEFREE The CD21(low) V(H)1-69(+) B cells of MC patients, like those of CVID and HIV patients, are anergic to BCR and TLR9 stimulation and display deregulation of several anergy-related genes; proliferative anergy is also observed in CD21(high) MZ-like V(H)1-69(+) B cells, that over-express the antiproliferative transcriptional repressor Stra13. 22940579 2013
Entrez Id: 613
Gene Symbol: BCR
BCR
0.020 Biomarker disease BEFREE The CD21(low) B cells have been shown to be profoundly anergic, and defects of BCR-mediated calcium signaling and of T cells have been described in CVID 1a. 21287551 2011
Entrez Id: 8553
Gene Symbol: BHLHE40
BHLHE40
0.010 AlteredExpression disease BEFREE The CD21(low) V(H)1-69(+) B cells of MC patients, like those of CVID and HIV patients, are anergic to BCR and TLR9 stimulation and display deregulation of several anergy-related genes; proliferative anergy is also observed in CD21(high) MZ-like V(H)1-69(+) B cells, that over-express the antiproliferative transcriptional repressor Stra13. 22940579 2013
Entrez Id: 640
Gene Symbol: BLK
BLK
0.010 AlteredExpression disease BEFREE B-cells expressing L3P-BLK showed accelerated destruction of BCR-internalized antigen and reduced ability to elicit CD40L-expression on antigen-specific CD4(+) T-cells.In conclusion, we found a novel BLK gene variant in CVID-patients that causes suppressed B-cell proliferation and reduced ability of B-cells to elicit antigen-specific CD4(+) T-cell responses. 25926555 2015
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 Biomarker disease BEFREE To explore the dysregulated networks in these subjects, we applied whole blood transcriptional profiling to 91 CVID subjects, 47 with inflammatory conditions and 44 without, in comparison to subjects with XLA and healthy controls. 24069364 2013
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 GeneticVariation disease BEFREE To examine the possibility that sporadic male cases with X-linked agammaglobulinaemia (XLA), which is caused by mutations in the Bruton's tyrosine kinase (Btk) gene, might be misregistered as having CVID, we employed a flow cytometric test to identify XLA in hypogammaglobulinaemic males registered as CVID in the Japanese Immunodeficiency Registry. 10844531 2000
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 GeneticVariation disease BEFREE The pathogenic origins of these two diseases are different; agammaglobulinemia is a group of inherited disorders that usually are caused by mutations in the gene encoding Bruton Tyrosine Kinase (BTK) protein while CVID is a heterogeneous disorder mainly without monogenic cause. 31059734 2019
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 Biomarker disease BEFREE Viruses and bacteria in bronchoalveolar lavage fluids, protected specimen brush samples, and bronchial biopsies from 14 patients with primary hypogammaglobulinemia (11 patients with common variable immunodeficiency [CVID] and three patients with X-linked agammaglobulinemia [XLA]) were analyzed. 10194166 1999
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 Biomarker disease BEFREE Seven known genetic defects, including Bruton tyrosine kinase (Btk), CD4OL, and signaling lymphocyte activation molecule-associated protein (SAP) (all X-linked) and inducible costimulator molecule (ICOS), transmembrane activator and calcium-modulator and cytophilin ligand interactor (TACI), B-cell-activating factor of the tumor necrosis family receptor (BAFFR), and CD19 (all autosomal recessive), were found in patients with the phenotype of common variable immunodeficiency (CVID). 18051214 2007
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 Biomarker disease BEFREE Among 550 registered patients, the predominant genetic defects associated with agammaglobulinemia (48 Bruton's tyrosine kinase [BTK] and 6 μ heavy chain deficiencies), HIgM syndrome (21 CD40 ligand and 7 activation-induced cytidine deaminase deficiencies), and CVID (17 lipopolysaccharides-responsive beige-like anchor deficiency and 12 atypical Immunodeficiency, Centromeric instability, and Facial dysmorphism syndromes) were identified. 30240888 2019
Entrez Id: 695
Gene Symbol: BTK
BTK
0.070 GeneticVariation disease BEFREE However, direct sequencing of the relevant Btk gene fragments for these four CVID patients revealed a mutation in only one patient. 11472409 2001
Entrez Id: 400757
Gene Symbol: C1orf141
C1orf141
0.100 GeneticVariation disease GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688 2015
Entrez Id: 775
Gene Symbol: CACNA1C
CACNA1C
0.100 GeneticVariation disease GWASDB Genome-wide association identifies diverse causes of common variable immunodeficiency. 21497890 2011
Entrez Id: 819
Gene Symbol: CAMLG
CAMLG
0.010 GeneticVariation disease BEFREE Transmembrane activator and calcium-modulating cyclophilin ligand interactor mutations in common variable immunodeficiency: clinical and immunologic outcomes in heterozygotes. 17983875 2007
Entrez Id: 84433
Gene Symbol: CARD11
CARD11
0.010 Biomarker disease BEFREE We performed direct gene sequencing of CARMA1/CARD11 and Bob1 in 66 patients with CVID. 21905497 2011
Entrez Id: 64170
Gene Symbol: CARD9
CARD9
0.100 GeneticVariation disease GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688 2015
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.010 Biomarker disease BEFREE We found increased basal levels of Bax and Bim in CVID B cells that correlated with low viability and high Caspase-3 activation only in CD27<sup>+</sup> B cells, particularly in a subgroup of apoptosis-prone CVID (AP-CVID) patients with low peripheral B cell counts and high autoimmunity prevalence (mostly cytopenias). 30464201 2018
Entrez Id: 842
Gene Symbol: CASP9
CASP9
0.010 Biomarker disease BEFREE Thus, cytotoxic T lymphocyte-associated antigen 4 or caspase-9 deficiency presenting with CVID-like phenotypes reiterate concepts of immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome and autoimmune lymphoproliferative syndrome. 26485099 2015
Entrez Id: 6363
Gene Symbol: CCL19
CCL19
0.010 Biomarker disease BEFREE The main findings were: (i) CVID patients have raised serum levels of CCL19 and CCL21 independently of features of chronic inflammation; (ii) CCL19 and CCR7 have similar expression in spleens from CVID patients and controls, while CCL21 is variably down-regulated in spleens from patients; (iii) T cell expression of CCR7 is particularly low in patients characterized by chronic inflammation in vivo; and (iv) PBMC from CVID patients had attenuated cytokine response to stimulation with CCL19 and CCL21. 19747210 2009
Entrez Id: 6366
Gene Symbol: CCL21
CCL21
0.010 Biomarker disease BEFREE The main findings were: (i) CVID patients have raised serum levels of CCL19 and CCL21 independently of features of chronic inflammation; (ii) CCL19 and CCR7 have similar expression in spleens from CVID patients and controls, while CCL21 is variably down-regulated in spleens from patients; (iii) T cell expression of CCR7 is particularly low in patients characterized by chronic inflammation in vivo; and (iv) PBMC from CVID patients had attenuated cytokine response to stimulation with CCL19 and CCL21. 19747210 2009
Entrez Id: 1236
Gene Symbol: CCR7
CCR7
0.030 Biomarker disease BEFREE Our observations indicate that a predominance of CCR7(-) T cells with effector-memory cell features and with reduced proliferative capacity may characterize a subgroup of CVID. 15498038 2004