Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.010 Biomarker disease BEFREE FDG PET-CT imaging of therapeutic response in granulomatous lymphocytic interstitial lung disease (GLILD) in common variable immunodeficiency (CVID). 27896807 2017
Entrez Id: 2669
Gene Symbol: GEM
GEM
0.010 Biomarker disease BEFREE This present study results support that HLA-Cw7 allele, an inhibitor of KIR ligand, may play a role in the pathogenesis of CVID. 25860853 2016
Entrez Id: 3811
Gene Symbol: KIR3DL1
KIR3DL1
0.010 Biomarker disease BEFREE This present study results support that HLA-Cw7 allele, an inhibitor of KIR ligand, may play a role in the pathogenesis of CVID. 25860853 2016
Entrez Id: 3812
Gene Symbol: KIR3DL2
KIR3DL2
0.010 Biomarker disease BEFREE Killer-cell immunoglobulin-like receptor and human leukocyte antigen-C genes in common variable immunodeficiency. 25860853 2016
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 GeneticVariation disease BEFREE PIK3CD gain of function mutations are more likely to occur in patients with defective B and T cell responses and should be screened for in CVID and CID, but are less likely in patients with a pure B cell/hypogammaglobulinaemia phenotype. 26437962 2016
Entrez Id: 1786
Gene Symbol: DNMT1
DNMT1
0.010 GeneticVariation disease BEFREE A novel DNMT1 mutation associated with early onset hereditary sensory and autonomic neuropathy, cataplexy, cerebellar atrophy, scleroderma, endocrinopathy, and common variable immune deficiency. 27277422 2016
Entrez Id: 3806
Gene Symbol: KIR2DS1
KIR2DS1
0.010 Biomarker disease BEFREE Killer-cell immunoglobulin-like receptor and human leukocyte antigen-C genes in common variable immunodeficiency. 25860853 2016
Entrez Id: 1012
Gene Symbol: CDH13
CDH13
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 2220
Gene Symbol: FCN2
FCN2
0.010 Biomarker disease BEFREE The reason for the deficiency of ficolin-2 in CVID and any possible causal relationship is currently unknown. 25251245 2015
Entrez Id: 4739
Gene Symbol: NEDD9
NEDD9
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 842
Gene Symbol: CASP9
CASP9
0.010 Biomarker disease BEFREE Thus, cytotoxic T lymphocyte-associated antigen 4 or caspase-9 deficiency presenting with CVID-like phenotypes reiterate concepts of immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome and autoimmune lymphoproliferative syndrome. 26485099 2015
Entrez Id: 51008
Gene Symbol: ASCC1
ASCC1
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 5897
Gene Symbol: RAG2
RAG2
0.010 GeneticVariation disease BEFREE In addition identification of hypomorphic mutations in RAG1 and RAG2 has led to an expansion of the spectrum of disease to include Omenn syndrome, early onset autoimmunity, granuloma, chronic cytomegalovirus- or EBV-infection with expansion of gamma/delta T-cells, idiophatic CD4 lymphopenia and a phenotype resembling common variable immunodeficiency. 26186701 2015
Entrez Id: 8874
Gene Symbol: ARHGEF7
ARHGEF7
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 23274
Gene Symbol: CLEC16A
CLEC16A
0.010 Biomarker disease BEFREE Association of CLEC16A with human common variable immunodeficiency disorder and role in murine B cells. 25891430 2015
Entrez Id: 3684
Gene Symbol: ITGAM
ITGAM
0.010 Biomarker disease BEFREE ITGAM encodes the integrin CD11b, a part of complement receptor 3, a novel candidate gene implicated here for the first time in the pathogenesis of CVID. 25678086 2015
Entrez Id: 2521
Gene Symbol: FUS
FUS
0.010 GeneticVariation disease BEFREE We report a novel association of CVID with rare variants at the FUS/ITGAM (CD11b) locus on 16p11.2. 25678086 2015
Entrez Id: 640
Gene Symbol: BLK
BLK
0.010 AlteredExpression disease BEFREE B-cells expressing L3P-BLK showed accelerated destruction of BCR-internalized antigen and reduced ability to elicit CD40L-expression on antigen-specific CD4(+) T-cells.In conclusion, we found a novel BLK gene variant in CVID-patients that causes suppressed B-cell proliferation and reduced ability of B-cells to elicit antigen-specific CD4(+) T-cell responses. 25926555 2015
Entrez Id: 57410
Gene Symbol: SCYL1
SCYL1
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 115482723
Gene Symbol: H3P40
H3P40
0.010 Biomarker disease BEFREE Given that residual p105 and p50—translated from the non-mutated alleles—were normal, and altered p50 proteins were absent, we conclude that the CVID phenotype in these families is caused by NF-κB1 p50 haploinsufficiency. 26279205 2015
Entrez Id: 91662
Gene Symbol: NLRP12
NLRP12
0.010 GeneticVariation disease BEFREE Here, we report on a 20-year-old female patient diagnosed with common variable immunodeficiency (CVID), who developed intestinal amyloidosis and carried novel compound heterozygous mutations in NLRP12, identified by whole exome and transcriptome sequencing. 25064839 2014
Entrez Id: 643
Gene Symbol: CXCR5
CXCR5
0.010 Biomarker disease BEFREE Using flow cytometry, we further demonstrated that there was a reduction in B cells (CD19+), switched memory B cells (CD27+IgD-) and T follicular helper (Tfh) cells (both CD4+CXCR5+ and CD4+CXCR5Hi) in a CVID patient with NFKB2/p100Δ19, compared to healthy controls. 24888602 2014
Entrez Id: 4684
Gene Symbol: NCAM1
NCAM1
0.010 Biomarker disease BEFREE Logistic regression on CVID (versus IgGSD) revealed a significant positive association with autoimmune conditions and significant negative associations with IgG1, IgG3, and IgA and CD56+/CD16+ lymphocyte levels, but the odds ratio was increased for autoimmune conditions alone (6.9 (95% CI 1.3, 35.5)). 25295286 2014
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 Biomarker disease BEFREE However, differences in the function of iNKT cells were noted in group 2, in which an increase in IFN-γ (P = .0016) and a decrease in IL-17 (P = .0002) production was observed between patients with CVID and controls. 24582167 2014
Entrez Id: 201254
Gene Symbol: CENPX
CENPX
0.010 AlteredExpression disease BEFREE The CD21(low) V(H)1-69(+) B cells of MC patients, like those of CVID and HIV patients, are anergic to BCR and TLR9 stimulation and display deregulation of several anergy-related genes; proliferative anergy is also observed in CD21(high) MZ-like V(H)1-69(+) B cells, that over-express the antiproliferative transcriptional repressor Stra13. 22940579 2013