Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Three subtypes have been described: TRPS I, caused by mutations in the TRPS1 gene on chromosome 8; TRPS II, a microdeletion syndrome affecting the TRPS1 and EXT1 genes; and TRPS III, a form with severe brachydactyly, due to short metacarpals, and severe short stature, but without exostoses. 11112658 2001
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Three subtypes have been described: TRPS I, caused by mutations in TRPS1 gene on chromosome 8; TRPS II, a microdeletion syndrome affecting the TRPS1 and EXT1 genes; and TRPS III, a form with severe brachydactyly, due to short metacarpals, and severe short stature, but without exostoses. 24357341 2014
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE DNA from the HME exostoses demonstrated heterozygous germline EXT1 or EXT2 mutations, and DNA from one solitary exostosis demonstrated a somatic EXT1 mutation. 12110435 2002
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE EXT 1 gene mutation induces chondrocyte cytoskeletal abnormalities and defective collagen expression in the exostoses. 10934647 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE In this study, we have characterized exostosis chondrocytes from three patients with HME (one with EXT1 and two with EXT2 germline mutations) and from one individual with a non-HME, isolated exostosis. 10750558 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE In our cohort of patients, variables such as female sex (odds ratio = 1.840; 95% confidence interval, 1.223 to 2.766), fewer than five skeletal sites with exostoses (odds ratio = 7.588; 95% confidence interval, 3.479 to 16.553), EXT2 mutations (odds ratio = 2.652; 95% confidence interval, 1.665 to 4.223), and absence of EXT1/2 mutations (odds ratio = 1.975; 95% confidence interval, 1.051 to 3.713) described patients with a mild phenotype; in contrast, a severe phenotype was associated with male sex (odds ratio = 2.431; 95% confidence interval, 1.544 to 3.826), EXT1 mutations (odds ratio = 6.817; 95% confidence interval, 1.003 to 46.348), and more than twenty affected skeletal sites (odds ratio = 2.413; 95% confidence interval, 1.144 to 5.091). 22258776 2011
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE The most severe forms of the disease and malignant transformation of exostoses to chondrosarcomas were associated with EXT1 mutations. 11432960 2001
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Two homologous genes, EXT1 and EXT2, responsible for the development of benign multiple cartilagenous bone tumors (exostoses) on the long bones, have been identified in the past 2 years. 9479495 1998
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Patients with EXT 1 mutation were found to have more exostoses, more limb malalignment with shorter limb segments and height, and more pelvic and flatbone involvement. 16879194 2006
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Among the four loci, the exostosis type 1 gene (EXT1) and type 2 gene (EXT2) have been cloned. 11170095 2001
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Three different exostosis (EXT) loci on chromosomes 8q (exostosin 1, EXT1), 11p (exostosin 2, EXT2) and 19p (exostosin 3, EXT3) have been reported. 16638657 2006
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE In our cohort of patients, variables such as female sex (odds ratio = 1.840; 95% confidence interval, 1.223 to 2.766), fewer than five skeletal sites with exostoses (odds ratio = 7.588; 95% confidence interval, 3.479 to 16.553), EXT2 mutations (odds ratio = 2.652; 95% confidence interval, 1.665 to 4.223), and absence of EXT1/2 mutations (odds ratio = 1.975; 95% confidence interval, 1.051 to 3.713) described patients with a mild phenotype; in contrast, a severe phenotype was associated with male sex (odds ratio = 2.431; 95% confidence interval, 1.544 to 3.826), EXT1 mutations (odds ratio = 6.817; 95% confidence interval, 1.003 to 46.348), and more than twenty affected skeletal sites (odds ratio = 2.413; 95% confidence interval, 1.144 to 5.091). 22258776 2011
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Germline mutations in the Exostoses-1 gene (EXT1) are found in hereditary multiple exostoses syndrome, which is characterized by the formation of osteochondromas and an increased risk of chondrosarcomas and osteosarcomas. 15385438 2004
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE In this study, we have characterized exostosis chondrocytes from three patients with HME (one with EXT1 and two with EXT2 germline mutations) and from one individual with a non-HME, isolated exostosis. 10750558 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Among the novel mutations in EXT1, c.1004T>G-associated HME exhibited overriding toes and scoliosis, c.1883+2T>A-associated HME exhibited brachydactyly, and c.459_460delCT-associated exostosis arising from vertebra T4 caused spinal cord compression. 21039224 2010
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE EXT1 mutations were more commonly observed in those with shoulder exostoses (odds ratio [OR], 20.6; 95% confidence interval [CI], 11.2-28.5; P = .001). 21106401 2011
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Three different exostosis (EXT) loci on chromosomes 8q (exostosin 1, EXT1), 11p (exostosin 2, EXT2) and 19p (exostosin 3, EXT3) have been reported. 16638657 2006
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE When the genotype data were used to construct haplotypes, the VDR AaTt joint genotype appeared to pose a remarkably lower odds (OR = 0.26, 95% CI = 0.08-0.91) of osteophyte compared with the AAtt joint genotype. 16507122 2006
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE We had previously found the VDR genotype to be associated with osteophytes and the K/L score, but not with JSN. 10902746 2000
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE Allelic variation in the vitamin D receptor gene was associated with severity of osteophytosis (adjusted OR "TT" v "tt" 0.41, 95% CI 0.17, 0.97), presence of disc narrowing (adjusted OR "TT" v "tt" 0.45, 95% CI 0.20, 0.99) and weakly with presence of osteophytosis (adjusted OR "TT" v "tt" 0.47, 95% CI 0.19, 1.16) but not with severity of disc narrowing (OR "TT" v "tt" 1.05, 95% CI 0.40, 2.72) or apophyseal arthritis (OR "TT" v "tt" 0.63, 95% CI 0.24, 1.59). 9613338 1998
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE The B allele of the VDR gene was associated with increasing severity of osteophyte. 15801025 2005
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.020 GeneticVariation disease BEFREE We found the COL2A1 genotype to be associated with a 2-fold increased risk for JSN, but not with osteophytes or the K/L score. 10902746 2000
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.020 GeneticVariation disease BEFREE In men, mean BMD increases with increasing age due to degenerative-changes at the spine including osteophytes and aortic calcification. 30446835 2018
Entrez Id: 47
Gene Symbol: ACLY
ACLY
0.020 GeneticVariation disease BEFREE Subgroup analysis of Grade 3 Osteophytes revealed that these were associated with a greater degree of macroscopic ACL damage. 27631646 2017
Entrez Id: 54829
Gene Symbol: ASPN
ASPN
0.020 GeneticVariation disease BEFREE An association with similar effect size was found between ASPN SNP rs13301537 and 2-year progression, and the mean change in osteophytes and JSN was significantly higher in homozygotes. 23357225 2013