Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.030 Biomarker disease BEFREE We have used, therefore, the technique of in situ hybridization to study the expression of the mRNAs for IGFs I and II and the type 1 IGF receptor in adult human osteophyte tissue. 7786631 1995
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.020 Biomarker disease BEFREE Cryostat sections of human osteophyte and osteoclastoma tissue were hybridized with an antisense RNA probe for osteopontin. 8314886 1993
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.020 AlteredExpression disease BEFREE We characterized expression of osteopontin mRNA and protein expression in both intramembranous and endochondral ossification, as well as remodeling bone, in the human osteophyte. 8592943 1995
Entrez Id: 1513
Gene Symbol: CTSK
CTSK
0.010 Biomarker disease BEFREE Western blot of human osteoclastoma or fetal rat humerus demonstrated bands of 38 and 27 kDa, consistent with sizes predicted for pro- and mature cathepsin K. Immunolocalization in osteoclastoma and osteophyte showed intense punctate staining of cathepsin K exclusively in osteoclasts, with a polar distribution that was more intense at the bone surface. 8647859 1996
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 Biomarker disease BEFREE Our results indicate a role of the VDR gene in the pathogenesis of osteophytes while linkage disequilibrium with another nearby gene, i.e., the collagen type IIa1 gene encoding the most abundant protein in cartilage, might contribute to the association. 9218501 1997
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Two homologous genes, EXT1 and EXT2, responsible for the development of benign multiple cartilagenous bone tumors (exostoses) on the long bones, have been identified in the past 2 years. 9479495 1998
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE Allelic variation in the vitamin D receptor gene was associated with severity of osteophytosis (adjusted OR "TT" v "tt" 0.41, 95% CI 0.17, 0.97), presence of disc narrowing (adjusted OR "TT" v "tt" 0.45, 95% CI 0.20, 0.99) and weakly with presence of osteophytosis (adjusted OR "TT" v "tt" 0.47, 95% CI 0.19, 1.16) but not with severity of disc narrowing (OR "TT" v "tt" 1.05, 95% CI 0.40, 2.72) or apophyseal arthritis (OR "TT" v "tt" 0.63, 95% CI 0.24, 1.59). 9613338 1998
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE Two genes, EXT1 and EXT2, and at least one other unidentified gene, are known to be involved in the formation of exostoses. 10679937 2000
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 Biomarker disease BEFREE Two genes, EXT1 and EXT2, and at least one other unidentified gene, are known to be involved in the formation of exostoses. 10679937 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE In this study, we have characterized exostosis chondrocytes from three patients with HME (one with EXT1 and two with EXT2 germline mutations) and from one individual with a non-HME, isolated exostosis. 10750558 2000
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE In this study, we have characterized exostosis chondrocytes from three patients with HME (one with EXT1 and two with EXT2 germline mutations) and from one individual with a non-HME, isolated exostosis. 10750558 2000
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.070 GeneticVariation disease BEFREE We had previously found the VDR genotype to be associated with osteophytes and the K/L score, but not with JSN. 10902746 2000
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
0.020 GeneticVariation disease BEFREE We found the COL2A1 genotype to be associated with a 2-fold increased risk for JSN, but not with osteophytes or the K/L score. 10902746 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE EXT 1 gene mutation induces chondrocyte cytoskeletal abnormalities and defective collagen expression in the exostoses. 10934647 2000
Entrez Id: 1634
Gene Symbol: DCN
DCN
0.010 Biomarker disease BEFREE The increased electrophoretic mobility of chondroitin sulfate and dermatan sulfate proteoglycans (PGs) extracted from the two bony exostoses was ascribed to an absence of the decorin core protein. 10934647 2000
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.040 Biomarker disease BEFREE There was a difference in the localization, which suggests the different roles of transforming growth factor-beta 1 and basic fibroblast growth factor in bone and cartilage metabolism in osteophyte formation. 10943193 2000
Entrez Id: 2247
Gene Symbol: FGF2
FGF2
0.010 Biomarker disease BEFREE There was a difference in the localization, which suggests the different roles of transforming growth factor-beta 1 and basic fibroblast growth factor in bone and cartilage metabolism in osteophyte formation. 10943193 2000
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Three subtypes have been described: TRPS I, caused by mutations in the TRPS1 gene on chromosome 8; TRPS II, a microdeletion syndrome affecting the TRPS1 and EXT1 genes; and TRPS III, a form with severe brachydactyly, due to short metacarpals, and severe short stature, but without exostoses. 11112658 2001
Entrez Id: 7227
Gene Symbol: TRPS1
TRPS1
0.020 GeneticVariation disease BEFREE Three subtypes have been described: TRPS I, caused by mutations in the TRPS1 gene on chromosome 8; TRPS II, a microdeletion syndrome affecting the TRPS1 and EXT1 genes; and TRPS III, a form with severe brachydactyly, due to short metacarpals, and severe short stature, but without exostoses. 11112658 2001
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Among the four loci, the exostosis type 1 gene (EXT1) and type 2 gene (EXT2) have been cloned. 11170095 2001
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 Biomarker disease BEFREE Among the four loci, the exostosis type 1 gene (EXT1) and type 2 gene (EXT2) have been cloned. 11170095 2001
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE The most severe forms of the disease and malignant transformation of exostoses to chondrosarcomas were associated with EXT1 mutations. 11432960 2001
Entrez Id: 1508
Gene Symbol: CTSB
CTSB
0.010 AlteredExpression disease BEFREE The mean cathepsin B mRNA level was significantly higher in OA cartilage and osteophytes than in normal cartilage. 11508434 2001
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE DNA from the HME exostoses demonstrated heterozygous germline EXT1 or EXT2 mutations, and DNA from one solitary exostosis demonstrated a somatic EXT1 mutation. 12110435 2002
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE This provides limited support for the two-hit hypothesis involving the EXT1 and EXT2 genes for the development of an exostosis. 12239711 2002