Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.010 GeneticVariation disease BEFREE Analysis of the CDR3 region of the rearranged IgH chain genes in patients with severe combined immunodeficiency and severe lymphopenia. 8648110 1996
Entrez Id: 399
Gene Symbol: RHOH
RHOH
0.010 GeneticVariation disease BEFREE Expression of the WT, but not of the mutated RHOH, allele in Rhoh-/- hematopoietic stem cells corrected the T cell lymphopenia in mice after bone marrow transplantation. 22850876 2012
Entrez Id: 2691
Gene Symbol: GHRH
GHRH
0.010 GeneticVariation disease BEFREE We have previously shown that mice with generalized ablation of growth hormone (GH) releasing hormone (GHRH) gene (<i>Ghrh</i><sup>-/-</sup>) have normal thymus and T-cell development, but present a marked spleen atrophy and B-cell lymphopenia. 30333823 2018
Entrez Id: 55655
Gene Symbol: NLRP2
NLRP2
0.010 GeneticVariation disease BEFREE Here we show that the deletion of the entire Nbs1 protein in T-cell precursors (Nbs1(T-del)) results in severe lymphopenia and a hindrance to the double-negative 3 (DN3)-to-DN4 transition in early T-cell development, due to abnormal TCRβ coding and signal joints as well as the functions of Nbs1 in T-cell expansion. 20921278 2010
Entrez Id: 10461
Gene Symbol: MERTK
MERTK
0.010 GeneticVariation disease BEFREE Our findings suggest that polymorphisms in MERTK might be one of the genetic risk factors for presenting leucopenia and lymphopenia in SLE patients. 16837475 2007
Entrez Id: 3615
Gene Symbol: IMPDH2
IMPDH2
0.010 GeneticVariation disease BEFREE ABCC1 (rs2074087) (P = 0.022, OR = 3.406), IMPDH1 (rs2278294) (P = 0.027, OR = 0.276), and IMPDH2 (rs11706052) (P = 0.034, OR = 3.639) had a significant impact on lymphopenia. 26332308 2015
Entrez Id: 5896
Gene Symbol: RAG1
RAG1
0.010 GeneticVariation disease BEFREE Relative CD4 lymphopenia and a skewed memory phenotype are the main immunologic abnormalities in a child with Omenn syndrome due to homozygous RAG1-C2633T hypomorphic mutation. 19246248 2009
Entrez Id: 3455
Gene Symbol: IFNAR2
IFNAR2
0.010 GeneticVariation disease BEFREE In SSc, the presence of antitopoisomerase and anti-U1 RNP antibodies and lymphopenia correlated with the higher IFN scores (P = 0.005, P = 0.001, and P = 0.004, respectively); a missense mutation in IFNAR2 was significantly associated with the IFN score. 20112391 2010
Entrez Id: 217
Gene Symbol: ALDH2
ALDH2
0.010 GeneticVariation disease BEFREE The ALDH2*1/*2 genotype was associated with leukocytopenia (<4,000/μl; adjusted odds ratio [95% confidence interval] = 1.89 [1.27 to 2.80]), granulocytopenia (<2,000/μl; 1.86 [1.22 to 2.82]), monocytopenia (<250/μl; 2.22 [1.49 to 3.29]), and lymphocytopenia (<1,000/μl; 1.93 [1.32 to 2.83]). 26917006 2016
Entrez Id: 4683
Gene Symbol: NBN
NBN
0.010 GeneticVariation disease BEFREE Here we show that the deletion of the entire Nbs1 protein in T-cell precursors (Nbs1(T-del)) results in severe lymphopenia and a hindrance to the double-negative 3 (DN3)-to-DN4 transition in early T-cell development, due to abnormal TCRβ coding and signal joints as well as the functions of Nbs1 in T-cell expansion. 20921278 2010
Entrez Id: 3614
Gene Symbol: IMPDH1
IMPDH1
0.010 GeneticVariation disease BEFREE ABCC1 (rs2074087) (P = 0.022, OR = 3.406), IMPDH1 (rs2278294) (P = 0.027, OR = 0.276), and IMPDH2 (rs11706052) (P = 0.034, OR = 3.639) had a significant impact on lymphopenia. 26332308 2015
Entrez Id: 8540
Gene Symbol: AGPS
AGPS
0.010 GeneticVariation disease BEFREE This study reports on a novel activating p110δ mutation causing adult-onset hypogammaglobulinemia with lymphopenia without the classical presentation of atypical Activated phosphoinositide 3-kinase δ syndrome (ADPS-1), underlining thus the heterogeneous clinical and immunological presentation of p110δ mutated individuals and offers additional data on the role of p110δ in early and late B cell development in humans. 30639166 2019
Entrez Id: 4363
Gene Symbol: ABCC1
ABCC1
0.010 GeneticVariation disease BEFREE ABCC1 (rs2074087) (P = 0.022, OR = 3.406), IMPDH1 (rs2278294) (P = 0.027, OR = 0.276), and IMPDH2 (rs11706052) (P = 0.034, OR = 3.639) had a significant impact on lymphopenia. 26332308 2015
Entrez Id: 8456
Gene Symbol: FOXN1
FOXN1
0.010 GeneticVariation disease BEFREE Heterozygous FOXN1 Variants Cause Low TRECs and Severe T Cell Lymphopenia, Revealing a Crucial Role of FOXN1 in Supporting Early Thymopoiesis. 31447097 2019
Entrez Id: 920
Gene Symbol: CD4
CD4
0.010 GeneticVariation disease BEFREE Here we report for the first time an absolute CD4 lymphocytopenia (<0.01 CD4<sup>+</sup> T-cells/μl) due to an autosomal recessive CD4 gene mutation that completely abrogates CD4 protein expression on the surface membrane of T-cells, monocytes, and dendritic cells. 31781092 2019
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.010 GeneticVariation disease BEFREE Signal transducer and activator of transcription 3 (STAT3) deficiency is responsible for autosomal dominant hyperimmunoglobulin E syndrome, characterized by recurrent bacterial and fungal infections, connective tissue abnormalities, hyperimmunoglobulin E, and Th17 lymphopenia. 22084479 2012
Entrez Id: 7297
Gene Symbol: TYK2
TYK2
0.010 GeneticVariation disease BEFREE These studies reveal a new clinical entity of a primary immunodeficiency with T-cell lymphopenia that is associated with compound heterozygous TYK2 mutations in the patients. 29725107 2018
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.010 GeneticVariation disease BEFREE Novel mutation in TP63 associated with ectrodactyly ectodermal dysplasia and clefting syndrome and T cell lymphopenia. 23613309 2013
Entrez Id: 7515
Gene Symbol: XRCC1
XRCC1
0.010 GeneticVariation disease BEFREE XRCC1 A1196G was associated with the incidence of lymphopenia (p = 0.024) and diarrhea (p = 0.020). 26033426 2015
Entrez Id: 168537
Gene Symbol: GIMAP7
GIMAP7
0.010 GeneticVariation disease BEFREE We show that lymphopenia is due to a frameshift deletion in a novel member (Ian5) of the Immune-Associated Nucleotide (IAN)-related gene family, resulting in truncation of a significant portion of the protein. 12097339 2002
Entrez Id: 1636
Gene Symbol: ACE
ACE
0.010 GeneticVariation disease BEFREE Features associated with abnormal CT-scan were: snowballs and/or peripheral multifocal choroiditis (PMC) upon ocular examination (P=0.004), blood lymphopenia (P<0.0001), angiotensin converting enzyme (ACE) level>1.5 ULN (P=0.0003). 28279837 2017
Entrez Id: 124976
Gene Symbol: SPNS2
SPNS2
0.010 GeneticVariation disease BEFREE We demonstrate a novel outcome of S1P-mediated regulation of lymphocyte trafficking, whereby deletion of Spns2, either globally or in a lymphatic endothelial-specific manner, creates a circulating lymphopenia and a higher percentage of effector T cells and natural killer (NK) cells present in the lung. 28052056 2017
Entrez Id: 5424
Gene Symbol: POLD1
POLD1
0.010 GeneticVariation disease BEFREE We identified a missense mutation (c. 3178C>T; p.R1060C) in POLD1 in 3 related subjects who presented with recurrent, especially herpetic, infections and T-cell lymphopenia with impaired T-cell but not B-cell proliferation. 31629014 2020
Entrez Id: 373156
Gene Symbol: GSTK1
GSTK1
0.010 GeneticVariation disease BEFREE Patients with IBD with a wildtype GST-M1 genotype present increased probability of developing adverse effects and increased incidence of lymphopenia during azathioprine treatment. 17206640 2007
Entrez Id: 545
Gene Symbol: ATR
ATR
0.010 GeneticVariation disease BEFREE Mouse model expressing kinase-dead ATR (Atr<sup>+/KD</sup>), but not loss of ATR (Atr<sup>+/-</sup>), displays ssDNA-dependent defects at the non-homologous region of X-Y chromosomes during male meiosis leading to sterility, and at telomeres, rDNA, and fragile sites during mitosis leading to lymphocytopenia. 30559436 2018