Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE Defects in the HMGI-C gene have been found in a variety of benign tumors, such as uterine leiomyomas, endometrial polyps, lipomas, and pulmonary chondroid hamartomas. 10998430 2000
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE Fusion of the high-mobility group protein gene HMGIC to other genes due to chromosomal rearrangements occurs in a variety of human benign tumors. 11170289 2001
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE Deregulation of the HMGA2 gene is a common molecular alteration implicated in the development of a variety of benign tumors, such as lipomas, uterine leiomyomas, and pulmonary chondroid hamartomas. 14612541 2003
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE This analysis clearly demonstrates that as a rule, germ line mutations of HMGA2 are not the cause for benign tumors, e.g. uterine leiomyomas, or human malignant solid tumors. 17094442 2006
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE Chromosomal rearrangements of the HMGA2 locus belong to the most common aberrations in human benign tumors. 15882911 2005
Entrez Id: 8091
Gene Symbol: HMGA2
HMGA2
0.400 GeneticVariation group BEFREE Rearrangements of the HMGI-C gene have frequently been detected in human benign tumors of mesenchymal origin, including lipomas. 10519386 1999
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.380 GeneticVariation group BEFREE No p14(ARF), p15(INK4B) and p16(INK4A) deletions or hypermethylation were observed in this benign tumor. 17203593 2006
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.380 GeneticVariation group BEFREE Our results demonstrate that alterations of the INK4a-ARF locus are frequent and important events not only in the carcinogenesis of malignant, but also in benign tumors. 12924439 2003
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.380 GeneticVariation group BEFREE The presence of BRAF V600E and mitogen-activated protein kinase activation in a largely benign tumor supports the necessity for secondary events (e.g., p16 loss) in BRAF-driven oncogenesis. 22727996 2012
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.340 GeneticVariation group BEFREE This study analyzed the relation of 5 single-nucleotide polymorphisms (SNPs) in the VEGF (vascular endothelial growth factor) gene in patients with epithelial ovarian cancer (EOC), compared with patients carrying benign tumors or healthy ovaries. 28574932 2017
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE The role of P53 mutations in the program of carcinogenic genetic alterations differs among tumor sites ranging from the earliest mutations that can be detected in premalignant cells to mutations that trigger malignant transformation of a benign neoplasm. 12063677 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Recent evidence indicates that some mutations in p53 arise as the cancer progresses from a benign tumor to a metastatic tumor and that these mutations in p53 actively contribute to the process of cancer progression. 16236433 2006
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE To explore p53 mutations in benign tumours, we have screened 70 colorectal adenomas for allelic loss at, and point mutations in, TP53 by analysis of selected microdissected cell populations. 12010886 2002
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE The identification of LOH involving TP53 and RB1 loci is a novel finding in benign cutaneous neurofibromas possibly demonstrating an alternative underlying molecular mechanism associated with the development of these benign tumors from this cohort of patients. 20358387 2010
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Since nuclear p53 protein within a cutaneous squamous cell carcinoma usually correlates with missense mutation, these data suggest that p53 mutations contribute to the development of this benign neoplasm. 8600795 1995
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE We conclude that somatic p53 mutations are very frequent in serous papillary carcinomas, particularly in tumors of high grade, bilaterality, and peritoneal spread, less frequent in other carcinoma types and extremely rare in borderline and benign tumors of the ovary. 7665249 1995
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE In addition, we observed no acquired mutations in exons 5-9 of the p53 gene in benign tumors from FAP patients. 8830720 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Five variants were previously reported to confer risk of various malignant or benign tumors (rs78378222 in TP53, rs10069690 in TERT, rs1800057 and rs1801516 in ATM, and rs7907606 at OBFC1) and four signals are located at established risk loci for hormone-related traits (endometriosis and breast cancer) at 1q36.12 (CDC42/WNT4), 2p25.1 (GREB1), 20p12.3 (MCM8), and 6q26.2 (SYNE1/ESR1). 30194396 2018
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Mutations in the p53 tumor suppressor gene occur in > 50% of human malignancies, but are exceedingly rare in benign tumors. 8287221 1993
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE Mutations in the p53 tumor suppressor gene are frequently present in human cancers but have rarely been described in benign tumors. 8855814 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE None of the benign tumors displayed significant p53 staining or p53 mutations. 11453810 2001
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE On the other hand, the p53 mutation frequency was higher in patients with premalignant tumors or nonmelanocytic skin cancer than in patients with only benign tumors. 9184777 1997
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE In addition, we identified additional mutation of the TP53 gene in anaplastic astrocytoma tissue but not in other benign tumors. 24344754 2014
Entrez Id: 4771
Gene Symbol: NF2
NF2
0.080 GeneticVariation group BEFREE Germ-line mutations in the neurofibromatosis 2 (NF2) gene cause a susceptibility to the development of schwannoma and meningioma, 2 mostly benign tumors of neural crest origin. 9679758 1998
Entrez Id: 7249
Gene Symbol: TSC2
TSC2
0.080 GeneticVariation group BEFREE The tuberous sclerosis-2 (TSC2) gene is linked to tuberous sclerosis (TSC), a dominantly inherited genetic syndrome in which inactivation of the normal TSC2 allele is associated with the development of mostly benign tumors and focal dysplasias. 9006320 1997