Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 406936
Gene Symbol: MIR144
MIR144
0.010 Biomarker disease BEFREE Collectively, the present work establishes miR-144 as a potential target for preventing and treating degenerative retinal diseases in which oxidative stress is paramount and RPE is prominently affected (e.g., age-related macular degeneration and diabetic retinopathy). 31590045 2020
Entrez Id: 10425
Gene Symbol: ARIH2
ARIH2
0.010 Biomarker disease BEFREE Sixty-eight patients presenting pigment epithelial detachments resistant to ranibizumab (issued from ARI2 study, register number NCT02157077 on clinicaltrials.gov) were compared with two series of patients derived from previously published clinical studies, presenting neovascular AMD (NAT2 study n = 300 and PHRC study n = 1,127), and with healthy controls (n = 441). 30681643 2020
Entrez Id: 10062
Gene Symbol: NR1H3
NR1H3
0.010 GeneticVariation disease BEFREE Specifically, loss of the Nr1h3 isoform results in pathobiologies aligned with AMD, supported by compromised visual function, accumulation of native and oxidized lipids in the outer retina, and upregulation of ocular inflammatory cytokines, while absence of Nr1h2 is associated with ocular lipoidal degeneration. 31829999 2020
Entrez Id: 3552
Gene Symbol: IL1A
IL1A
0.010 Biomarker disease BEFREE In particular, the interleukin 1 (IL-1) family consisting of both pro- and anti-inflammatory cytokines has been shown to be pivotal in the mediation of innate immunity and contribute directly to a number of retinal degenerations, including Age-Related Macular Degeneration (AMD), diabetic retinopathy, retinitis pigmentosa, glaucoma, and retinopathy of prematurity (ROP). 31379825 2019
Entrez Id: 3146
Gene Symbol: HMGB1
HMGB1
0.010 Biomarker disease BEFREE Our data indicate that A2E-induced upregulation of HMGB1、Caveolin-1 and HMGB1 release may relate to RPE cell senescence and play a role in the pathogenesis of AMD. 31284269 2019
Entrez Id: 219844
Gene Symbol: HYLS1
HYLS1
0.010 Biomarker disease BEFREE This cross-sectional questionnaire study used the validated HLS-EU-Q16 questionnaire to determine the health literacy of 225 patients with age-related macular degeneration (AMD), diabetic macular edema (DME) or retinal vein occlusion (RVO), receiving intravitreal treatment at the retinal clinic, Zealand University Hospital, Denmark. 31395040 2019
Entrez Id: 407018
Gene Symbol: MIR27A
MIR27A
0.010 Biomarker disease BEFREE Interestingly, the bioinformatic analysis showed that MIR27A and MIR146A take part in the angiogenic and inflammatory pathways underlying AMD etiopathogenesis. 30934838 2019
Entrez Id: 2113
Gene Symbol: ETS1
ETS1
0.010 Biomarker disease BEFREE Intravitreal Ets1 siRNA alleviates choroidal neovascularization in a mouse model of age-related macular degeneration. 30834976 2019
Entrez Id: 4345
Gene Symbol: CD200
CD200
0.010 AlteredExpression disease BEFREE Here, we investigated monocyte CD200 expression - the circulating middleman negotiating retinal microglial activity - in a poorly understood subtype of age-related macular degeneration. 30047199 2019
Entrez Id: 619554
Gene Symbol: MIR486-1
MIR486-1
0.010 AlteredExpression disease BEFREE In the validation studies, miR-129-3p and miR-132-3p had no significant expression in AMD group compared to the controls. miR-486-5p and miR-626 had higher expression in AMD patients compared to the control group, while miR-885-5p showed significantly lower expression. 31277558 2019
Entrez Id: 6098
Gene Symbol: ROS1
ROS1
0.010 Biomarker disease BEFREE Therefore, the mitochondrial DNA damage reaction (mtDDR) is important in AMD prevention and in slowing down its progression as is ROS-targeting AMD therapy. 31091656 2019
Entrez Id: 10808
Gene Symbol: HSPH1
HSPH1
0.010 Biomarker disease BEFREE Eight common and rare variants in genes CFH, C3, ARMS2, COL8A1, and HSPH1/B3GALTL conferred a significantly higher risk of transition to advanced AMD. 30389371 2019
Entrez Id: 726
Gene Symbol: CAPN5
CAPN5
0.010 Biomarker disease BEFREE The CAPN5-NIV vitreous proteome displayed characteristic enrichment of proteins and pathways previously-associated with non-infectious posterior uveitis, rhegmatogenous retinal detachment (RRD), age-related macular degeneration (AMD), proliferative diabetic retinopathy (PDR), and proliferative vitreoretinopathy (PVR). 31110225 2019
Entrez Id: 331
Gene Symbol: XIAP
XIAP
0.010 AlteredExpression disease BEFREE Together, these data suggest XIAP-mediated inhibition of inflammasome activity in RPE may provide insights into the biological consequences of inflammasome activation in RPE and reveals the caspase-1/XIAP/IL-1β/IL-18 axis as a target for broader applications in AMD biology and treatment design. 31438981 2019
Entrez Id: 4803
Gene Symbol: NGF
NGF
0.010 Biomarker disease BEFREE In addition, cell-specific localization of proteins NGF and BDNF in the retina during AMD development is not clear. 30871541 2019
Entrez Id: 2729
Gene Symbol: GCLC
GCLC
0.010 AlteredExpression disease BEFREE Nrf-2 (p < 0.05), HO-1 and GCLC expressions were lowered in the retina of AMD, whereas GCLM and GSTpi expressions were decreased (p < 0.05) with an increase in HO-1 in choroid-RPE of AMD. 31271759 2019
Entrez Id: 10628
Gene Symbol: TXNIP
TXNIP
0.010 Biomarker disease BEFREE Together, these findings reveal three distinct mechanisms by which TXNIP downregulation disrupts RPE cell function and thereby exacerbates AMD pathogenesis. 31615975 2019
Entrez Id: 346007
Gene Symbol: EYS
EYS
0.010 GeneticVariation disease BEFREE Two siblings with macular dystrophy carried compound heterozygous EYS variants: c.1299+5_1299+8del and c.6050G>T. 31074760 2019
Entrez Id: 10668
Gene Symbol: CGRRF1
CGRRF1
0.010 GeneticVariation disease BEFREE After correcting for multiple testing (n = 37,428), we identified four variants significantly associated with AMD: rs200437673 (LCN9, p = 1.50 × 10<sup>-11</sup>), rs151214675 (RTEL1, p = 3.18 × 10<sup>-8</sup>), rs140250387 (DLGAP1, p = 4.49 × 10<sup>-7</sup>), and rs115333865 (CGRRF1, p = 1.05 × 10<sup>-6</sup>). 31367973 2019
Entrez Id: 59067
Gene Symbol: IL21
IL21
0.010 Biomarker disease BEFREE Dysregulations of follicular helper T cells through IL-21 pathway in age-related macular degeneration. 31394381 2019
Entrez Id: 4331
Gene Symbol: MNAT1
MNAT1
0.010 Biomarker disease BEFREE In age-related macular degeneration this delicate ménage à trois is disturbed by the chronic infiltration of inflammatory macrophages. 30754662 2019
Entrez Id: 406921
Gene Symbol: MIR132
MIR132
0.010 AlteredExpression disease BEFREE In the validation studies, miR-129-3p and miR-132-3p had no significant expression in AMD group compared to the controls. miR-486-5p and miR-626 had higher expression in AMD patients compared to the control group, while miR-885-5p showed significantly lower expression. 31277558 2019
Entrez Id: 5336
Gene Symbol: PLCG2
PLCG2
0.010 Biomarker disease BEFREE We further refined our definition of statistical driver gene to identify PLCG2 as a candidate gene for AMD due to its significant gene-level signals (P < 0.0001) across KEGG, Reactome, GO, and NetPath pathways. 31560769 2019
Entrez Id: 51750
Gene Symbol: RTEL1
RTEL1
0.010 GeneticVariation disease BEFREE After correcting for multiple testing (n = 37,428), we identified four variants significantly associated with AMD: rs200437673 (LCN9, p = 1.50 × 10<sup>-11</sup>), rs151214675 (RTEL1, p = 3.18 × 10<sup>-8</sup>), rs140250387 (DLGAP1, p = 4.49 × 10<sup>-7</sup>), and rs115333865 (CGRRF1, p = 1.05 × 10<sup>-6</sup>). 31367973 2019
Entrez Id: 2968
Gene Symbol: GTF2H4
GTF2H4
0.010 Biomarker disease BEFREE The novel differentially methylated genes SKI and GTF2H4 have not been previously associated with AMD, and regulate disease pathways implicated in AMD, including TGF beta signaling (SKI) and transcription-dependent DNA repair mechanisms (GTF2H4). 30642396 2019