Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 Biomarker disease BEFREE Clonal relationship between the teratoma and rhabdomyosarcoma of the germ cell tumor was established by the presence in both of i(12p), the characteristic marker of germ cell tumors. 1676906 1991
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 Biomarker disease BEFREE The metastatic yolk sac tumor had a hypertriploid karyotype and a DI of 1.78 and lacked the germ cell tumor marker i(12p). 2297683 1990
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 Biomarker disease BEFREE In one case, two copies of the germ cell tumor marker i(12p) were found. 2331686 1990
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 Biomarker disease BEFREE The most significant cytogenetic finding was the presence of the metacentric germ cell tumor marker i(12p) in an inguinal metastasis. 2766245 1989
Entrez Id: 174
Gene Symbol: AFP
AFP
0.050 Biomarker disease BEFREE We recommend that all males with KS and early sexual development or with "normal" testicular growth be screened with measurement of germ cell tumor markers including beta-subunit of human chorionic gonadotropin and alpha-fetoprotein. 7535510 1995
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 Biomarker disease BEFREE This included a germ cell tumor in 12 (30%) patients by the finding of i(12p), increased 12p copy number, or a deletion of the long arm of chromosome 12. 7799031 1995
Entrez Id: 28471
Gene Symbol: IGHV1-12
IGHV1-12
0.060 GeneticVariation disease BEFREE One or more copies of i(12p), excess 12p copy number, or a deletion on the long arm of chromosome 12 was found in seven of 28 (25%) midline tumors of uncertain histogenesis, thus establishing a diagnosis of a germ cell tumor in these patients. 8308927 1994
Entrez Id: 174
Gene Symbol: AFP
AFP
0.050 Biomarker disease BEFREE Hereditary persistence of alpha-fetoprotein (HPAFP) should be considered in both children and adults with unexplained and persistent elevation of AFP e.g., those screened for hepatocellular carcinoma or diagnosed for germ cell tumor. 9681083 1998
Entrez Id: 8712
Gene Symbol: PAGE1
PAGE1
0.010 Biomarker disease BEFREE Further database analysis indicates the presence of other genes with high homology to PAGE-1, which were found in cDNA libraries derived from testis, pooled libraries (with testis), and in a germ cell tumor library. 9724777 1998
Entrez Id: 9506
Gene Symbol: PAGE4
PAGE4
0.010 Biomarker disease BEFREE Further database analysis indicates the presence of other genes with high homology to PAGE-1, which were found in cDNA libraries derived from testis, pooled libraries (with testis), and in a germ cell tumor library. 9724777 1998
Entrez Id: 6940
Gene Symbol: ZNF354A
ZNF354A
0.010 Biomarker disease BEFREE The differential regulation of TCF17 during neoplastic germ cell differentiation may be of predictive value in germ cell tumor diagnosis. 9788609 1998
Entrez Id: 7490
Gene Symbol: WT1
WT1
0.010 AlteredExpression disease BEFREE WT1 gene expression was detected in three of the four gastric cancer cell lines, all of the five colon cancer cell lines, 12 of the 15 lung cancer cell lines, two of the four breast cancer cell lines, the germ cell tumor cell line, the two ovarian cancer cell lines, the uterine cancer cell line, the thyroid cancer cell line, and the hepatocellular carcinoma cell line. 10189890 1999
Entrez Id: 3976
Gene Symbol: LIF
LIF
0.010 AlteredExpression disease BEFREE Studies of LIF transcript expression in germ cell tumor cell lines identified two novel human LIF transcripts, hLIF-M and hLIF-T, containing noncoding alternate first exons that are conserved among all reported LIF genes. 10366419 1999
Entrez Id: 174
Gene Symbol: AFP
AFP
0.050 Biomarker disease BEFREE By establishing sensitive nested reverse transcription-PCRs for the detection of mRNA of alpha-fetoprotein (AFP) and beta human chorionic gonadotropin (betahCG), we investigated the presence of circulating tumor cells in the peripheral blood of 119 patients with germ-cell tumor. 10866307 2000
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.030 Biomarker disease BEFREE None of the remaining eight cases with frequent positive cells, the nine cases with occasionally positive p53 staining, or the two cases with no staining recurred or demonstrated other germ cell tumor elements. 12202994 2003
Entrez Id: 333929
Gene Symbol: SNAI3
SNAI3
0.010 AlteredExpression disease BEFREE Human SNAI3 mRNA was expressed in skin melanotic melanoma, lung epidermoid carcinoma, and germ cell tumor. 12579345 2003
Entrez Id: 174
Gene Symbol: AFP
AFP
0.050 Biomarker disease BEFREE The prognostic information provided by alpha-fetoprotein and human chorionic gonadotrophin in the management of germ cell tumor (GCT) patients is a biochemical reflection of tumor differentiation. 12860944 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.030 AlteredExpression disease BEFREE Cluster analysis of p53 and Ki67 expression, apoptosis, alpha-fetoprotein, and human chorionic gonadotrophin indicates a favorable prognostic subgroup within the embryonal carcinoma germ cell tumor. 12860944 2003
Entrez Id: 9573
Gene Symbol: GDF3
GDF3
0.010 GeneticVariation disease BEFREE Notably, human STELLAR is located distal to a previously uncharacterized homeobox gene, which is the human homolog of the recently identified murine gene, Nanog, and proximal to the GDF3 locus, whose transcription is restricted to germ cell tumor cells. 14990856 2004
Entrez Id: 1676
Gene Symbol: DFFA
DFFA
0.010 Biomarker disease BEFREE Mutations in the N-terminal domain of DFF45 in a primary germ cell tumor and in neuroblastoma tumors. 15492818 2004
Entrez Id: 642559
Gene Symbol: POU5F1P3
POU5F1P3
0.010 GeneticVariation disease BEFREE Recently, major progress has been made in identifying gene-products related to germ cell tumor development (testis-specific protein-Y encoded and octamer binding transcription factor 3/4) and in recognizing early changes of germ cells (maturation delay, preneoplastic lesions, and in situ neoplasia). 16735607 2006
Entrez Id: 5460
Gene Symbol: POU5F1
POU5F1
0.010 GeneticVariation disease BEFREE Recently, major progress has been made in identifying gene-products related to germ cell tumor development (testis-specific protein-Y encoded and octamer binding transcription factor 3/4) and in recognizing early changes of germ cells (maturation delay, preneoplastic lesions, and in situ neoplasia). 16735607 2006
Entrez Id: 645682
Gene Symbol: POU5F1P4
POU5F1P4
0.010 GeneticVariation disease BEFREE Recently, major progress has been made in identifying gene-products related to germ cell tumor development (testis-specific protein-Y encoded and octamer binding transcription factor 3/4) and in recognizing early changes of germ cells (maturation delay, preneoplastic lesions, and in situ neoplasia). 16735607 2006
Entrez Id: 10942
Gene Symbol: PRSS21
PRSS21
0.010 Biomarker disease BEFREE Bisulfite sequencing and subsequent real-time RT-PCR were carried out in germ cell tumor cell lines and a cervical carcinoma cell line to reveal CpG sites implicated in testisin gene silencing. 16810501 2006
Entrez Id: 728137
Gene Symbol: TSPY3
TSPY3
0.010 Biomarker disease BEFREE TSPY protein localized with established germ cell tumor markers, such as the placental alkaline phosphatase, c-KIT, and OCT3/4, in the same tumor cells of both gonadoblastoma and adjacent carcinoma in situ, the precursor for germ cell tumors. 17349529 2007