Source: GWASDB ×
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs780094
rs780094
GCKR
24 0.658 0.400 2 27518370 intron variant T/C snv 0.67 0.800 1.000 1 2008 2015
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
13 0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 0.860 0.800 2 2005 2016
dbSNP: rs780093
rs780093
GCKR
13 0.763 0.240 2 27519736 intron variant T/C snv 0.68 0.800 1.000 1 2010 2010
dbSNP: rs102275
rs102275
TMEM258
10 0.827 0.320 11 61790331 non coding transcript exon variant T/C snv 0.47 0.810 1.000 1 2010 2018
dbSNP: rs2516049
rs2516049
HLA-DRB1
9 0.742 0.400 6 32602623 intergenic variant T/C snv 0.27 0.710 1.000 1 2013 2016
dbSNP: rs9275572
rs9275572 		9 0.724 0.360 6 32711222 upstream gene variant A/G;T snv 0.700 1.000 1 2013 2013
dbSNP: rs1893217
rs1893217
PTPN2
8 0.742 0.440 18 12809341 intron variant A/G snv 0.12 0.850 1.000 3 2008 2016
dbSNP: rs9271366
rs9271366 		8 0.807 0.240 6 32619077 intergenic variant G/A snv 0.86 0.820 1.000 2 2011 2015
dbSNP: rs13003464
rs13003464
PUS10
7 0.827 0.200 2 60959694 intron variant A/G snv 0.50 0.800 1.000 2 2008 2012
dbSNP: rs2872507
rs2872507 		7 0.752 0.360 17 39884510 intergenic variant G/A;T snv 0.820 1.000 2 2008 2016
dbSNP: rs477515
rs477515
HLA-DRB1
7 0.790 0.400 6 32601914 intergenic variant G/A snv 0.27 0.700 1.000 1 2013 2013
dbSNP: rs2542151
rs2542151 		6 0.763 0.480 18 12779948 upstream gene variant G/T snv 0.83 0.880 1.000 4 2007 2016
dbSNP: rs3197999
rs3197999
APEH ; MST1
6 0.732 0.280 3 49684099 missense variant G/A snv 0.26 0.27 0.830 1.000 2 2008 2017
dbSNP: rs6679677
rs6679677
PHTF1
6 0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 0.800 1.000 2 2008 2015
dbSNP: rs3024505
rs3024505 		6 0.790 0.320 1 206766559 upstream gene variant G/A snv 0.11 0.850 0.875 1 2008 2017
dbSNP: rs660895
rs660895
HLA-DRB1
6 0.752 0.360 6 32609603 intergenic variant A/G snv 0.19 0.700 1.000 1 2013 2013
dbSNP: rs9264942
rs9264942
HLA-B ; LOC112267902
6 0.763 0.400 6 31306603 intron variant T/C snv 0.34 0.800 1.000 1 2012 2015
dbSNP: rs9275312
rs9275312 		6 0.807 0.280 6 32697951 intergenic variant A/G snv 0.16 0.700 1.000 1 2013 2013
dbSNP: rs11209026
rs11209026
IL23R
5 0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 0.900 0.944 8 2006 2020
dbSNP: rs10758669
rs10758669 		5 0.763 0.280 9 4981602 upstream gene variant C/A;T snv 0.850 1.000 2 2008 2016
dbSNP: rs2858331
rs2858331 		5 0.827 0.240 6 32713500 upstream gene variant A/G snv 0.42 0.700 1.000 2 2008 2013
dbSNP: rs3763313
rs3763313
BTNL2
5 0.807 0.320 6 32408694 upstream gene variant A/C snv 0.21 0.700 1.000 1 2008 2008
dbSNP: rs7927894
rs7927894 		5 0.742 0.320 11 76590272 upstream gene variant C/T snv 0.35 0.810 1.000 1 2008 2011
dbSNP: rs212388
rs212388
LOC105378083 ; LOC112267968
4 0.827 0.240 6 159069404 intron variant C/G;T snv 0.810 1.000 3 2010 2017
dbSNP: rs3764147
rs3764147
LACC1
4 0.807 0.280 13 43883789 missense variant A/G snv 0.28 0.27 0.810 1.000 3 2008 2017