Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121908120
rs121908120
0.810 GeneticVariation BEFREE Among them, the stop codon p.C107* as well as the biallelic p.F228I variants correlate with the most severe oligodontia phenotypes. 30426266

2019

dbSNP: rs515726227
rs515726227
0.710 GeneticVariation BEFREE In this study, we identified a novel heterozygous non-stop mutation (c.910_911dupTA, p.*304Tyrext*48) in MSX1 in a Chinese family with autosomal dominant non-syndromic oligodontia. 24914010

2014

dbSNP: rs11001553
rs11001553
0.020 GeneticVariation BEFREE In a previous study, we found that polymorphism in rs11001553 of DKK1 was associated with hypodontia in the Chinese Han population. 24737523

2014

dbSNP: rs11001553
rs11001553
0.020 GeneticVariation BEFREE A significant difference was observed, between subjects with non-syndromic hypodontia and controls, in the allele and genotype frequencies of two markers [rs929387 of GLI family zinc finger 3 (GLI3) and rs11001553 of Dickkopf-related protein 1 (DKK1)]. 22984994

2012

dbSNP: rs121908568
rs121908568
0.020 GeneticVariation BEFREE We analysed this novel AXIN2 mutant, together with two reported AXIN2 mutants [c.1966C>T (p.Arg656Stop) and c.1994delG (p.Leu688Stop)] that cause colorectal cancer with and without oligodontia, to study the effect of the mutant p.His660Tyr on the Wnt/β-catenin signaling pathway and to compare the molecular pathogenesis of different AXIN2 mutants in tooth agenesis and carcinogenesis. 27090353

2016

dbSNP: rs121908568
rs121908568
0.020 GeneticVariation BEFREE We show that oligodontia and predisposition to cancer are caused by a nonsense mutation, Arg656Stop, in the Wnt-signaling regulator AXIN2. 15042511

2004

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE Our findings may imply that the PAX9 A240P</span> mutation is a risk factor for oligodontia in the Chinese population. 21530942

2011

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE In addition, the C allele and C carrier (CG + CC) of 718C, IVS2-109, rs4904210, and rs7143727 showed no significant association with oligodontia. 25501211

2014

dbSNP: rs730882193
rs730882193
0.020 GeneticVariation BEFREE We describe a family with a novel, inherited AXIN2 mutation (c.1989G>A) segregating in an autosomal dominant pattern with oligodontia and variable other findings including colonic polyposis, gastric polyps, a mild ectodermal dysplasia phenotype with sparse hair and eyebrows, and early onset colorectal and breast cancers. 21416598

2011

dbSNP: rs730882193
rs730882193
0.020 GeneticVariation BEFREE Heterozygous, germline nonsense mutations in AXIN2 have been reported in two families with oligodontia and colorectal cancer (CRC) predisposition, including an AXIN2 1989G>A mutation. 26025668

2015

dbSNP: rs1095
rs1095
0.010 GeneticVariation BEFREE In conclusion, these meta-analysis results demonstrated that polymorphisms in the rs1095 region of the MSX1 gene may influence the transcriptional activity of this gene and are associated with hypodontia in humans. 25501212

2014

dbSNP: rs121908119
rs121908119
0.010 GeneticVariation BEFREE Among them, the stop codon p.C107* as well as the biallelic p.F228I variants correlate with the most severe oligodontia phenotypes. 30426266

2019

dbSNP: rs121909637
rs121909637
0.010 GeneticVariation BEFREE A mutation of TP63 (c.1010G>T; R337L) leads to SHFM with hypodontia. 31420900

2019

dbSNP: rs1270965996
rs1270965996
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs12881240
rs12881240
0.010 GeneticVariation BEFREE Similarly, the T allele and T carrier (CT + TT) of C912T and rs12881240 in the PAX9 gene also indicated an increased risk of hypodontia. 25501211

2014

dbSNP: rs132630321
rs132630321
EDA
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs1392844787
rs1392844787
0.010 GeneticVariation BEFREE Searches for mutations in these candidate genes detected a novel nonsense mutation (c.416G>A) in exon 1 of MSX1 from a family with oligodontia. 24329876

2014

dbSNP: rs139871607
rs139871607
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs1418913084
rs1418913084
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs142343894
rs142343894
0.010 GeneticVariation BEFREE The previously described, functional GREM2 mutation (c.226C > G, p.Gln76Glu) was identified in two patients with hypodontia and associated dental anomalies, including taurodontism and microdontia. 28992378

2018

dbSNP: rs147680216
rs147680216
0.010 GeneticVariation BEFREE We identified a novel compound heterozygous missense mutation in WNT10A (c.637G>A:p.Gly213Ser and c.1070C>T:p.Thr357Ile) as the likely cause of autosomal recessive oligodontia in the child. 29178643

2017

dbSNP: rs2240308
rs2240308
0.010 GeneticVariation BEFREE Study of rs12532, rs8670 Polymorphism of Msh Homeobox 1 (MSX1), rs61754301, rs4904155 Polymorphism of Paired Box Gene 9 (PAX9), and rs2240308 Polymorphism of Axis Inhibitor Protein 2 (AXIN2) Genes in Nonsyndromic Hypodontia. 31781599

2019

dbSNP: rs28933971
rs28933971
0.010 GeneticVariation BEFREE The R28P mutation dramatically reduces DNA binding of the PAX9 paired domain and supports the hypothesis that loss of DNA binding is the pathogenic mechanism by which the mutation causes oligodontia. 14689302

2004

dbSNP: rs34165410
rs34165410
0.010 GeneticVariation BEFREE Our finding suggests that identified polymorphisms (c.348C>T and c.469+56delins GCCGGGTGGGG) may be responsible for the oligodontia phenotype in this Chinese family, but the association requires further study. 23731659

2013

dbSNP: rs374534090
rs374534090
0.010 GeneticVariation BEFREE We identified two novel MSX1 variants with an amino acid substitution within the homeodomain; Thr174Ile (T174I) from a sporadic hypodontia case and Leu205Arg (L205R) from a familial oligodontia case. 25101640

2014