Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121908120
rs121908120
A 0.810 CausalMutation CLINVAR

dbSNP: rs1057519389
rs1057519389
T 0.700 CausalMutation CLINVAR

dbSNP: rs1131692034
rs1131692034
EDA
A 0.700 CausalMutation CLINVAR

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE Our findings may imply that the PAX9 A240P</span> mutation is a risk factor for oligodontia in the Chinese population. 21530942

2011

dbSNP: rs515726227
rs515726227
CAT 0.710 CausalMutation CLINVAR A human MSX1 homeodomain missense mutation causes selective tooth agenesis. 8696335

1996

dbSNP: rs121909637
rs121909637
0.010 GeneticVariation BEFREE A mutation of TP63 (c.1010G>T; R337L) leads to SHFM with hypodontia. 31420900

2019

dbSNP: rs11001553
rs11001553
0.020 GeneticVariation BEFREE A significant difference was observed, between subjects with non-syndromic hypodontia and controls, in the allele and genotype frequencies of two markers [rs929387 of GLI family zinc finger 3 (GLI3) and rs11001553 of Dickkopf-related protein 1 (DKK1)]. 22984994

2012

dbSNP: rs67707918
rs67707918
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs1270965996
rs1270965996
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs139871607
rs139871607
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs67682641
rs67682641
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs121908119
rs121908119
0.010 GeneticVariation BEFREE Among them, the stop codon p.C107* as well as the biallelic p.F228I variants correlate with the most severe oligodontia phenotypes. 30426266

2019

dbSNP: rs121908120
rs121908120
0.810 GeneticVariation BEFREE Among them, the stop codon p.C107* as well as the biallelic p.F228I variants correlate with the most severe oligodontia phenotypes. 30426266

2019

dbSNP: rs876657641
rs876657641
EDA
A 0.700 GeneticVariation CLINVAR EDA gene mutations underlie non-syndromic oligodontia. 19278982

2009

dbSNP: rs397516654
rs397516654
EDA
C 0.700 GeneticVariation CLINVAR Functional analysis of Ectodysplasin-A mutations causing selective tooth agenesis. 19623212

2010

dbSNP: rs730882193
rs730882193
0.020 GeneticVariation BEFREE Heterozygous, germline nonsense mutations in AXIN2 have been reported in two families with oligodontia and colorectal cancer (CRC) predisposition, including an AXIN2 1989G>A mutation. 26025668

2015

dbSNP: rs11001553
rs11001553
0.020 GeneticVariation BEFREE In a previous study, we found that polymorphism in rs11001553 of DKK1 was associated with hypodontia in the Chinese Han population. 24737523

2014

dbSNP: rs929387
rs929387
0.010 GeneticVariation BEFREE In a previous study, we observed that polymorphism in rs929387 of GLI3 might be associated with hypodontia in the Chinese Han population based on a limited population. 24278334

2013

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE In addition, the C allele and C carrier (CG + CC) of 718C, IVS2-109, rs4904210, and rs7143727 showed no significant association with oligodontia. 25501211

2014

dbSNP: rs7143727
rs7143727
0.010 GeneticVariation BEFREE In addition, the C allele and C carrier (CG + CC) of 718C, IVS2-109, rs4904210, and rs7143727 showed no significant association with oligodontia. 25501211

2014

dbSNP: rs1095
rs1095
0.010 GeneticVariation BEFREE In conclusion, these meta-analysis results demonstrated that polymorphisms in the rs1095 region of the MSX1 gene may influence the transcriptional activity of this gene and are associated with hypodontia in humans. 25501212

2014

dbSNP: rs752881223
rs752881223
0.010 GeneticVariation BEFREE In the present study, we identified a de novo AXIN2 missense mutation (c.314T>G) in a Chinese individual with non-syndromic oligodontia. 26406231

2015

dbSNP: rs132630321
rs132630321
EDA
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs1418913084
rs1418913084
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs776377834
rs776377834
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009