Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121908120
rs121908120
A 0.810 CausalMutation CLINVAR

dbSNP: rs1057519389
rs1057519389
T 0.700 CausalMutation CLINVAR

dbSNP: rs1131692034
rs1131692034
EDA
A 0.700 CausalMutation CLINVAR

dbSNP: rs515726227
rs515726227
CAT 0.710 CausalMutation CLINVAR A human MSX1 homeodomain missense mutation causes selective tooth agenesis. 8696335

1996

dbSNP: rs121908568
rs121908568
0.020 GeneticVariation BEFREE We show that oligodontia and predisposition to cancer are caused by a nonsense mutation, Arg656Stop, in the Wnt-signaling regulator AXIN2. 15042511

2004

dbSNP: rs28933971
rs28933971
0.010 GeneticVariation BEFREE The R28P mutation dramatically reduces DNA binding of the PAX9 paired domain and supports the hypothesis that loss of DNA binding is the pathogenic mechanism by which the mutation causes oligodontia. 14689302

2004

dbSNP: rs779059411
rs779059411
0.010 GeneticVariation BEFREE Our finding suggests the missense transversion (c.662C>A) and the polymorphisms (c.347C>G) may be responsible for oligodontia phenotype in this Chinese family. 18374898

2008

dbSNP: rs876657641
rs876657641
EDA
A 0.700 GeneticVariation CLINVAR EDA gene mutations underlie non-syndromic oligodontia. 19278982

2009

dbSNP: rs132630321
rs132630321
EDA
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs1418913084
rs1418913084
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs776377834
rs776377834
0.010 GeneticVariation BEFREE In this study, a novel EDA mutation (Thr338Met) that results in X-linked non-syndromic hypodontia in a Chinese family was identified. 18657636

2009

dbSNP: rs397516654
rs397516654
EDA
C 0.700 GeneticVariation CLINVAR Functional analysis of Ectodysplasin-A mutations causing selective tooth agenesis. 19623212

2010

dbSNP: rs797044484
rs797044484
G 0.700 CausalMutation CLINVAR Molecular basis of EEC (ectrodactyly, ectodermal dysplasia, clefting) syndrome: five new mutations in the DNA-binding domain of the TP63 gene and genotype-phenotype correlation. 19903181

2010

dbSNP: rs4904210
rs4904210
0.020 GeneticVariation BEFREE Our findings may imply that the PAX9 A240P</span> mutation is a risk factor for oligodontia in the Chinese population. 21530942

2011

dbSNP: rs730882193
rs730882193
0.020 GeneticVariation BEFREE We describe a family with a novel, inherited AXIN2 mutation (c.1989G>A) segregating in an autosomal dominant pattern with oligodontia and variable other findings including colonic polyposis, gastric polyps, a mild ectodermal dysplasia phenotype with sparse hair and eyebrows, and early onset colorectal and breast cancers. 21416598

2011

dbSNP: rs3764897
rs3764897
0.010 GeneticVariation BEFREE Moreover, the gene-gene interaction analysis revealed a significant epistatic interaction between CHDH (rs6445606) and PLD2 (rs3764897) in the susceptibility to hypodontia (p=0.004). 21308979

2011

dbSNP: rs6445606
rs6445606
0.010 GeneticVariation BEFREE Individuals carrying one copy of the rs6445606 C allele had an over two-fold decreased risk of having hypodontia (odds ratio [OR]CTvsTT=0.434; 95% confidence interval [CI], 0.2724-0.6915; p=0.0004; pcorr=0.0084). 21308979

2011

dbSNP: rs1555316704
rs1555316704
A 0.700 CausalMutation CLINVAR Mutations in WNT10A are present in more than half of isolated hypodontia cases. 22581971

2012

dbSNP: rs11001553
rs11001553
0.020 GeneticVariation BEFREE A significant difference was observed, between subjects with non-syndromic hypodontia and controls, in the allele and genotype frequencies of two markers [rs929387 of GLI family zinc finger 3 (GLI3) and rs11001553 of Dickkopf-related protein 1 (DKK1)]. 22984994

2012

dbSNP: rs1270965996
rs1270965996
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs139871607
rs139871607
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs67682641
rs67682641
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs67707918
rs67707918
0.010 GeneticVariation BEFREE A spontaneous novel mutation in COL1A2 (c.1171G>A; p.Gly391Ser) causing only dentin defects and a novel mutation in PAX9 (c.43T>A; p.Phe15Ile) causing hypodontia were identified and correlated with the phenotypic presentations in the family. 23227268

2012

dbSNP: rs34165410
rs34165410
0.010 GeneticVariation BEFREE Our finding suggests that identified polymorphisms (c.348C>T and c.469+56delins GCCGGGTGGGG) may be responsible for the oligodontia phenotype in this Chinese family, but the association requires further study. 23731659

2013

dbSNP: rs929387
rs929387
0.010 GeneticVariation BEFREE In a previous study, we observed that polymorphism in rs929387 of GLI3 might be associated with hypodontia in the Chinese Han population based on a limited population. 24278334

2013