Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1163944538
rs1163944538
TMEM94
GA 0.700 CausalMutation CLINVAR

dbSNP: rs1202430946
rs1202430946
IGHMBP2
A 0.700 CausalMutation CLINVAR

dbSNP: rs1352010373
rs1352010373
TMEM94
C 0.700 CausalMutation CLINVAR

dbSNP: rs1555939456
rs1555939456
RPS6KA3
C 0.700 GeneticVariation CLINVAR

dbSNP: rs1557781252
rs1557781252
GATAD2B
A 0.700 CausalMutation CLINVAR

dbSNP: rs1568523935
rs1568523935
SLC25A42
G 0.700 GeneticVariation CLINVAR

dbSNP: rs587778779
rs587778779
CYP27A1
T 0.700 CausalMutation CLINVAR

dbSNP: rs121918237
rs121918237
SLC34A3
0.010 GeneticVariation BEFREE Renal calcifications that are presumably due to increased urinary calcium excretion can be the presenting finding in homozygous carriers of G196R in SLC34A3/NaPi-IIc, and some or all laboratory features of HHRH may be masked by vitamin D deficiency. 18523928

2009
dbSNP: rs10741657
rs10741657
CYP2R1
0.820 GeneticVariation GWASDB Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs10741657
rs10741657
CYP2R1
0.820 GeneticVariation GWASCAT Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs12785878
rs12785878
NADSYN1
0.810 GeneticVariation GWASDB Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs12785878
rs12785878
NADSYN1
0.810 GeneticVariation GWASCAT Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs2282679
rs2282679
GC
0.810 GeneticVariation GWASCAT Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs2282679
rs2282679
GC
0.810 GeneticVariation GWASDB Common genetic determinants of vitamin D insufficiency: a genome-wide association study. 20541252

2010
dbSNP: rs1428826948
rs1428826948
APOL1
G 0.700 SusceptibilityMutation CLINVAR Association of trypanolytic ApoL1 variants with kidney disease in African Americans. 20647424

2010
dbSNP: rs151344517
rs151344517
AFG3L2 ; TUBB6 ; LOC107985154
T 0.700 CausalMutation CLINVAR Missense mutations in the AFG3L2 proteolytic domain account for ∼1.5% of European autosomal dominant cerebellar ataxias. 20725928

2010
dbSNP: rs1569534160
rs1569534160
APOL1
G 0.700 SusceptibilityMutation CLINVAR Association of trypanolytic ApoL1 variants with kidney disease in African Americans. 20647424

2010
dbSNP: rs2243250
rs2243250
IL4
0.020 GeneticVariation BEFREE When examined jointly with SNPs, a significant interaction between IL4 gene polymorphism (rs2243250) and VDD (p(interaction) = 0.003, p(FDR) = 0.10) was found: VDD increased the risk of FS among children carrying CC/CT genotypes (OR = 1.79, 95%CI: 1.15-2.77). 21819409

2011
dbSNP: rs12979860
rs12979860
IFNL4
0.010 GeneticVariation BEFREE Complementary role of vitamin D deficiency and the interleukin-28B rs12979860 C/T polymorphism in predicting antiviral response in chronic hepatitis C. 21480318

2011
dbSNP: rs2243250
rs2243250
IL4
0.020 GeneticVariation BEFREE As in a previous study, MS4A2 (rs512555, P(interaction) = 0.04) and IL4 (rs2243250, P(interaction) = 0.02), and their composite score (P(interaction) = 0.009) modified the association between VDD and allergy-related outcome. 22686937

2012
dbSNP: rs512555
rs512555
MS4A2
0.010 GeneticVariation BEFREE As in a previous study, MS4A2 (rs512555, P(interaction) = 0.04) and IL4 (rs2243250, P(interaction) = 0.02), and their composite score (P(interaction) = 0.009) modified the association between VDD and allergy-related outcome. 22686937

2012
dbSNP: rs12785878
rs12785878
NADSYN1
0.810 GeneticVariation BEFREE Polymorphisms in CYP2R1-rs10766197 and DHCR7/NADSYN1-rs12785878 are associated with vitamin D deficiency in Uygur and Kazak ethnic populations. 26149120

2015
dbSNP: rs2282679
rs2282679
GC
0.810 GeneticVariation BEFREE Using multiple logistic regression analysis, vitamin D deficiency was significantly associated with the GC rs2282679 genotype (odds ratio [OR] per C allele 1.80, 95% confidence interval CI 1.57-2.01), independent of established risk factors for vitamin D deficiency including age, sex, and BMI. 25370324

2015
dbSNP: rs4588
rs4588
GC
0.040 GeneticVariation BEFREE The rs70141657G/A of CYP2R1 and rs7041T/G and rs4588C/A of vitamin D binding protein genetic polymorphisms were associated with increased risk of vitamin D deficiency among apparently healthy Jordanians. 26383826

2015
dbSNP: rs7041
rs7041
GC
0.040 GeneticVariation BEFREE The rs70141657G/A of CYP2R1 and rs7041T/G and rs4588C/A of vitamin D binding protein genetic polymorphisms were associated with increased risk of vitamin D deficiency among apparently healthy Jordanians. 26383826

2015