Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1042636
rs1042636
0.010 GeneticVariation BEFREE Patients with VDD bearing the GG genotype of R990G SNPs are prone to have higher iPTH levels and lower calcium. 25695075

2015

dbSNP: rs10766197
rs10766197
0.010 GeneticVariation BEFREE Polymorphisms in CYP2R1-rs10766197 and DHCR7/NADSYN1-rs12785878 are associated with vitamin D deficiency in Uygur and Kazak ethnic populations. 26149120

2015

dbSNP: rs1459015
rs1459015
0.010 GeneticVariation BEFREE Analysis of results also indicated that the Sudanese carriers of the CC genotype of SNP rs1459015 had a higher risk of suffering from vitamin D deficiency (P=0.02). 26339419

2015

dbSNP: rs10741657
rs10741657
0.820 GeneticVariation BEFREE The presence of GG allele of the SNP rs2228570 of VDR gene, SNPs rs4588 of GC gene and CYP2R1 rs10741657 gene was associated with vitamin D deficiency. 27570856

2016

dbSNP: rs4588
rs4588
GC
0.040 GeneticVariation BEFREE The presence of GG allele of the SNP rs2228570 of VDR gene, SNPs rs4588 of GC gene and CYP2R1 rs10741657 gene was associated with vitamin D deficiency. 27570856

2016

dbSNP: rs2296651
rs2296651
0.010 GeneticVariation BEFREE Individuals with homozygous p.Ser267Phe in SLC10A1 are prone to vitamin D deficiency, deviated sex hormones and blood lipids. 28835676

2017

dbSNP: rs4809959
rs4809959
0.010 GeneticVariation BEFREE Similarly, vitamin D deficiency significantly increased the risk of transitioning to SLE in those with two minor alleles at rs4809959 (adjusted OR: 4.90, CI 1.33 to 18.04). 27283331

2017

dbSNP: rs10741657
rs10741657
0.820 GeneticVariation BEFREE Published articles provide evidence supporting a major role for the rs10741657 polymorphism of the CYP2R1 gene in determining 25(OH)D levels and the presence of vitamin D deficiency. 30120973

2018

dbSNP: rs4588
rs4588
GC
0.040 GeneticVariation BEFREE In women with a vitamin D deficiency (<20 ng/ml), the GT allele of the VDBP SNP rs7041 (p value =0.04), the VDBP allelic combination Gc1F/1F (T allele of rs4588 and C allele of rs7041) (p value =0.03), and the GA allele of the CYP2R1 SNP rs2060793 (p = 0.05) were associated with an increased risk of developing PCOS. 28008453

2018

dbSNP: rs4588
rs4588
GC
0.040 GeneticVariation BEFREE DBP polymorphism was associated to HCV genotype (GC rs7041), previous HCV treatment, and GGT (GC rs4588).In conclusion, low frequency of vitamin D deficiency was found, but VDR polymorphisms were frequently associated to fibrosis grade suggesting that they could be used as disease evaluation markers to understand the mechanisms underlying the virus-host interaction. 29465575

2018

dbSNP: rs7041
rs7041
GC
0.040 GeneticVariation BEFREE Genotype risk score (GRS) calculated from rs7041, rs2242480 and rs2209314 shown a significantly negative association with 25(OH)D levels. 29153269

2018

dbSNP: rs7041
rs7041
GC
0.040 GeneticVariation BEFREE In women with a vitamin D deficiency (<20 ng/ml), the GT allele of the VDBP SNP rs7041 (p value =0.04), the VDBP allelic combination Gc1F/1F (T allele of rs4588 and C allele of rs7041) (p value =0.03), and the GA allele of the CYP2R1 SNP rs2060793 (p = 0.05) were associated with an increased risk of developing PCOS. 28008453

2018

dbSNP: rs7041
rs7041
GC
0.040 GeneticVariation BEFREE DBP polymorphism was associated to HCV genotype (GC rs7041), previous HCV treatment, and GGT (GC rs4588).In conclusion, low frequency of vitamin D deficiency was found, but VDR polymorphisms were frequently associated to fibrosis grade suggesting that they could be used as disease evaluation markers to understand the mechanisms underlying the virus-host interaction. 29465575

2018

dbSNP: rs1155563
rs1155563
GC
0.010 GeneticVariation BEFREE Variants of GC rs16846876, rs17467825, rs2282679, rs3755967, rs2298850, rs4588, rs7041 and rs1155563, CYP3A4 rs2242480 and CYP24A1 rs2209314 were significantly associated with both 25(OH)D concentrations and vitamin D deficiency (25(OH)D < 15 ng/mL). 29153269

2018

dbSNP: rs2060793
rs2060793
0.010 GeneticVariation BEFREE In women with a vitamin D deficiency (<20 ng/ml), the GT allele of the VDBP SNP rs7041 (p value =0.04), the VDBP allelic combination Gc1F/1F (T allele of rs4588 and C allele of rs7041) (p value =0.03), and the GA allele of the CYP2R1 SNP rs2060793 (p = 0.05) were associated with an increased risk of developing PCOS. 28008453

2018

dbSNP: rs2209314
rs2209314
0.010 GeneticVariation BEFREE Genotype risk score (GRS) calculated from rs7041, rs2242480 and rs2209314 shown a significantly negative association with 25(OH)D levels. 29153269

2018

dbSNP: rs2242480
rs2242480
0.010 GeneticVariation BEFREE Genotype risk score (GRS) calculated from rs7041, rs2242480 and rs2209314 shown a significantly negative association with 25(OH)D levels. 29153269

2018

dbSNP: rs2246709
rs2246709
0.010 GeneticVariation BEFREE Interactions between seasons and CYP27A1 rs933994, CYP3A4 rs2246709 on plasma 25(OH)D concentrations were also observed. 29153269

2018

dbSNP: rs4809957
rs4809957
0.010 GeneticVariation BEFREE There was transmission disequilibrium for allele G of rs4809957 in T2DM families, which was linked to vitamin D deficiency. 29428204

2018

dbSNP: rs10766196
rs10766196
0.010 GeneticVariation BEFREE The GG+GA genotype of CYP2R1 rs12794714 and AA+AG genotype of CYP2R1 rs10766196 were associated with prevalent vitamin D deficiency in children with type 1 diabetes. 31206955

2019

dbSNP: rs12794714
rs12794714
0.010 GeneticVariation BEFREE The GG+GA genotype of CYP2R1 rs12794714 and AA+AG genotype of CYP2R1 rs10766196 were associated with prevalent vitamin D deficiency in children with type 1 diabetes. 31206955

2019

dbSNP: rs1544410
rs1544410
VDR
0.010 GeneticVariation BEFREE Our findings for the first time indicated that there is a strong association between vitamin D deficiency, lipid profile and the VDR rs1544410G>A and rs7T41>G VDBP genes polymorphisms. 31359379

2019

dbSNP: rs1993116
rs1993116
0.010 GeneticVariation BEFREE Multivariate analysis revealed that cold season, advanced fibrosis, and CYP2R1 rs1993116 genotype non-AA were independent factors significantly associated with vitamin D deficiency. 30683615

2019

dbSNP: rs2239179
rs2239179
VDR
0.010 GeneticVariation BEFREE When comparing with wild-type homozygous and heterozygous genotype carriers with vitamin D sufficiency, hypovitaminosis D and insufficient participants carrying homozygous variant genotype of rs2239179 showed a higher risk of EH, increased by 113% (OR = 2.13, 95% CI: 1.20, 3.80); Notably, the detrimental effect of rs2239179 homozygous variant on EH became stronger in the case of serum 25(OH)D<sub>3</sub> <30 ng/ml. 31827258

2019

dbSNP: rs3918242
rs3918242
0.010 GeneticVariation BEFREE Vitamin D deficiency was also a predominant feature among all MS patients irrespective of their MMP9 genotypes of rs3918242, implying its association with MS activity in different courses of the disease. 31082619

2019