Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2476601
rs2476601
0.850 GeneticVariation BEFREE Stratifying patients affected with AITDs according to their phenotype (Graves' disease and Hashimoto's thyroiditis) and RA patients according to the presence of rheumatoid factor (RF) and antibodies against cyclic citrullinated peptides (ACPA) did not show any significant association with PTPN22 R620W allele (p>0.05). 19343596

2009

dbSNP: rs2476601
rs2476601
0.850 GeneticVariation BEFREE The minor allele of the R620W missense single-nucleotide polymorphism (SNP; rs2476601) in the PTPN22 (protein tyrosine phosphatase non-receptor 22) gene has been reported to be associated with multiple autoimmune diseases, including type 1 diabetes, systemic lupus erythematosus, rheumatoid arthritis, juvenile idiopathic arthritis, autoimmune thyroiditis and vitiligo. 16464986

2006

dbSNP: rs2476601
rs2476601
0.850 GeneticVariation BEFREE (3) regarding the subtypes of AITDs, patients with Graves' disease (GD) had a significant higher degree of C1858T polymorphism (TT vs. CC, OR=2.35, 95%CI=1.36˜4.05; TC vs. CC, OR=1.46, 95%CI=1.12˜1.89; TT/TC vs. CC, OR=1.54, 95%CI=1.33˜1.80; TT vs. TC/CC, OR=2.16, 95%CI=1.25˜3.72), while no association was observed in patients with Hashimoto's thyroiditis (HT).No publication bias was observed. 22374238

2012

dbSNP: rs2476601
rs2476601
0.850 GeneticVariation BEFREE The C1858T polymorphism of the PTNP22 gene reduces the expression of its encoded LYP, which increases the risk of GD and HT. 28133421

2017

dbSNP: rs2476601
rs2476601
0.850 GeneticVariation BEFREE To evaluate the prevalence of PTPN22 C1858T polymorphism in young type 1 diabetes patients with or without autoimmune thyroiditis. 20438787

2010

dbSNP: rs7537605
rs7537605
0.710 GeneticVariation BEFREE A genome-wide direct comparison between HT and GD revealed an SNP at the VAV3 locus with genome-wide significant association signals (rs7537605: P(combined) = 3.90 × 10(-8); odds ratio(combined) = 1.77; 95% confidence interval = 1.44-2.17). 25429627

2015

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE BRAF(V600E) mutation is associated with a more advanced PTC at diagnosis; however, its role in the clinicopathological characteristics of PTC with concurrent HT is unknown. 23469895

2013

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Association between BRAF V600E Mutation and Ultrasound Features in Papillary Thyroid Carcinoma Patients with and without Hashimoto's Thyroiditis. 28687736

2017

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE The pooled analysis indicated that age<45 years (OR = 1.57, 95%CI:1.48-1.66, P < 0.001), male gender (OR = 1.79, 95%CI: 1.69-1.91, P < 0.001), tumor size>10 mm (OR = 2.61, 95%CI:2.27-3.00, P < 0.001), bilaterality (OR = 1.52, 95%CI:1.31-1.77, P < 0.001), multifocality (OR = 1.46, 95%CI: 1.31-1.61, P < 0.001), extracapsular invasion (OR = 2.10, 95%CI:1.81-2.43, P < 0.001), angiolymphatic invasion (OR = 8.02, 95%CI:5.00-12.87, P < 0.001), high histologic risk (OR = 2.62, 95%CI:2.13-3.22, P < 0.001) and BRAF(V600E) mutation (OR:1.78, 95%CI:1.38-2.30, P < 0.001) were significantly associated with CLNM, and upper third location (OR = 0.54, 95%CI:0.43-0.67, P < 0.001) and lymphocytic thyroiditis (OR = 0.64, 95%CI:0.42-0.97, P = 0.034) were decreased risk factors of CLNM. 26944586

2016

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Clinical and pathological features and the BRAF(V600E) mutation in patients with papillary thyroid carcinoma with and without concurrent Hashimoto thyroiditis. 19014278

2009

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Our results show that HT in patients with PTC is associated with a low probability of BRAF (V600E) mutations. 25312294

2015

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Screening for activating BRAF mutations in a series of 83 PTCs identified the most common V600E mutation in 39 cases (histologically, 38 classic PTCs and 1 sclerosing variant PTC) and a complex in-frame mutation involving amino acids V600-S605 in a stage III multicentric follicular variant PTC, occurring in a 50-year-old female patient, who was affected by hypothyroidism in autoimmune thyroiditis and had a family history of PTC and autoimmune thyroiditis. 18426810

2008

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Hashimoto's thyroiditis and BRAF(V600E) status may help to predict clinical outcome of PTC. 25213729

2016

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE BRAF V600E mutation could be demonstrated at significantly lower rates in cases of PTC + HT (32.1 vs 60.7%, p < 0.005). 30666518

2019

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE These results indicate that BRAF(V600E) assessment by pyrosequencing is a reliable assay useful to refine inconclusive cytology of thyroid nodules also in the presence of concurrent HT. 23775008

2014

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE In addition, Hashimoto's thyroiditis was related to less lymph node metastasis and extrathyroidal extension in PTCs with BRAF(V600E) mutation. 26041461

2016

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE This meta-analysis confirmed significant associations between BRAF(V600E) mutation and female gender, multifocality, ETE, LNM, TNM stage, concomitant hashimoto thyroiditis, vascular invasion and recurrence/persistence, suggesting the predictive value of BRAF(V600E) mutation for PTC prognosis. 26871894

2016

dbSNP: rs113488022
rs113488022
0.100 GeneticVariation BEFREE Chronic lymphocytic thyroiditis and BRAF V600E in papillary thyroid carcinoma. 26598713

2016

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE Our results show that HT in patients with PTC is associated with a low probability of BRAF (V600E) mutations. 25312294

2015

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE Hashimoto's thyroiditis and BRAF(V600E) status may help to predict clinical outcome of PTC. 25213729

2016

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE BRAF V600E mutation could be demonstrated at significantly lower rates in cases of PTC + HT (32.1 vs 60.7%, p < 0.005). 30666518

2019

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE Association between BRAF V600E Mutation and Ultrasound Features in Papillary Thyroid Carcinoma Patients with and without Hashimoto's Thyroiditis. 28687736

2017

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE These results indicate that BRAF(V600E) assessment by pyrosequencing is a reliable assay useful to refine inconclusive cytology of thyroid nodules also in the presence of concurrent HT. 23775008

2014

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE This meta-analysis confirmed significant associations between BRAF(V600E) mutation and female gender, multifocality, ETE, LNM, TNM stage, concomitant hashimoto thyroiditis, vascular invasion and recurrence/persistence, suggesting the predictive value of BRAF(V600E) mutation for PTC prognosis. 26871894

2016

dbSNP: rs121913377
rs121913377
0.100 GeneticVariation BEFREE BRAF(V600E) mutation is associated with a more advanced PTC at diagnosis; however, its role in the clinicopathological characteristics of PTC with concurrent HT is unknown. 23469895

2013