Disease: Tuberculosis
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs12212067
FOXO3
0.716 0.320 6 108659993 intron variant T/G snv 0.14 20
rs187238
IL18
0.602 0.680 11 112164265 intron variant C/A;G snv 48
rs1946518
IL18
0.602 0.760 11 112164735 intron variant T/G snv 0.60 46
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs754342091
TLR4
0.790 0.200 9 117712421 missense variant A/G snv 3.2E-05 1.4E-05 7
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs3751143
P2RX7 ; LOC105370032
0.742 0.480 12 121184501 missense variant A/C;G snv 0.19; 4.0E-06 12
rs2234711
IFNGR1
0.827 0.080 6 137219383 5 prime UTR variant A/G snv 0.43 6
rs2569190
CD14 ; TMCO6
0.620 0.560 5 140633331 intron variant A/G snv 0.57 39
rs13361189 0.752 0.240 5 150843825 upstream gene variant T/C snv 0.21 13
rs4958843
IRGM
0.925 0.080 5 150845362 upstream gene variant T/C snv 0.21 2
rs72553867
IRGM
0.925 0.080 5 150848404 missense variant C/A;T snv 4.9E-02 2
rs10065172
IRGM
0.790 0.200 5 150848436 synonymous variant C/T snv 0.17 0.21 8
rs1816702
TLR2
0.827 0.120 4 153688371 non coding transcript exon variant T/C snv 0.79 6
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 98
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 108
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs17235409
SLC11A1
0.653 0.600 2 218395009 missense variant G/A;C snv 4.9E-02; 4.1E-06 31
rs10754558
NLRP3
0.695 0.480 1 247448734 3 prime UTR variant G/C;T snv 20
rs1799964
LTA ; LOC100287329 ; TNF
0.608 0.760 6 31574531 upstream gene variant T/C snv 0.19 47
rs1799724
LTA ; TNF
0.600 0.680 6 31574705 upstream gene variant C/T snv 8.5E-02 47
rs1800629
TNF
0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 169
rs1024611 0.568 0.800 17 34252769 upstream gene variant A/G snv 0.28 63