Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs113488022
BRAF
0.351 0.840 7 140753336 missense variant A/C;G;T snv 4.0E-06 484
rs121434568
EGFR
0.568 0.560 7 55191822 missense variant T/A;G snv 73
rs121434569
EGFR-AS1 ; EGFR
0.581 0.520 7 55181378 missense variant C/T snv 2.8E-05 5.6E-05 70
rs121913364
BRAF
0.641 0.520 7 140753334 missense variant T/C;G snv 4.0E-06 23
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 53
rs3748093
BRAF
0.925 0.120 7 140800651 intron variant T/A snv 1.5E-02 4
rs1016343
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.807 0.240 8 127081052 non coding transcript exon variant C/T snv 0.20 5
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 19
rs13252298
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.827 0.160 8 127082911 non coding transcript exon variant A/G snv 0.24 7
rs2294008
PSCA ; JRK
0.672 0.320 8 142680513 5 prime UTR variant C/T snv 0.46 0.45 27
rs2976392
JRK ; PSCA
0.724 0.240 8 142681514 3 prime UTR variant G/A snv 0.46 0.45 15
rs42490
RIPK2
0.882 0.160 8 89766285 intron variant G/A snv 0.60 4
rs531564
LINC00599 ; MIR124-1
0.672 0.480 8 9903189 non coding transcript exon variant G/C snv 0.14 27
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 55
rs13293512 0.763 0.360 9 94167461 intron variant T/C snv 0.24 11
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 221
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs1219648
FGFR2
0.716 0.320 10 121586676 intron variant A/G;T snv 16
rs290481
TCF7L2
0.827 0.200 10 113164066 intron variant C/T snv 0.20 8
rs74799832
RET
0.662 0.280 10 43121968 missense variant T/C snv 4.0E-06 21
rs104894230
HRAS ; LRRC56
0.564 0.600 11 534288 missense variant C/A;G;T snv 42
rs11225395
MMP8
0.776 0.360 11 102725749 intron variant A/C;G snv 11
rs1695
GSTP1
0.457 0.880 11 67585218 missense variant A/G snv 0.34 0.36 187