Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs121434569
EGFR-AS1 ; EGFR
0.581 0.520 7 55181378 missense variant C/T snv 2.8E-05 5.6E-05 70
rs121913364
BRAF
0.641 0.520 7 140753334 missense variant T/C;G snv 4.0E-06 23
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs121913529
KRAS
0.492 0.680 12 25245350 missense variant C/A;G;T snv 4.0E-06 135
rs1695
GSTP1
0.457 0.880 11 67585218 missense variant A/G snv 0.34 0.36 187
rs17655
BIVM-ERCC5 ; ERCC5
0.597 0.560 13 102875652 missense variant G/C snv 0.28 0.30 52
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs1800470
TGFB1
0.515 0.840 19 41353016 missense variant G/A;C snv 0.55; 2.4E-04 106
rs20541
IL13 ; TH2LCRR
0.585 0.720 5 132660272 missense variant A/G snv 0.72 0.77 47
rs2231142
ABCG2
0.583 0.680 4 88131171 missense variant G/C;T snv 4.0E-06; 0.12 54
rs2236338
GZMB
0.851 0.120 14 24631076 missense variant A/G snv 0.24 0.25 6
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 55
rs3816527
PTX3 ; VEPH1
0.882 0.160 3 157437525 missense variant C/A snv 0.64 0.64 9
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 221
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs727503094
LRRC56 ; HRAS
0.633 0.440 11 534287 missense variant GC/AG;AT;TA;TT mnv 41
rs74799832
RET
0.662 0.280 10 43121968 missense variant T/C snv 4.0E-06 21
rs752021744
PIK3CB
0.689 0.440 3 138759306 missense variant T/C snv 1.2E-05 29
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs1016343
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.807 0.240 8 127081052 non coding transcript exon variant C/T snv 0.20 5
rs10877887
LINC01465 ; MIRLET7I
0.701 0.440 12 62603400 non coding transcript exon variant T/C snv 0.42 18
rs11730582
SPP1
0.807 0.240 4 87975269 non coding transcript exon variant T/C snv 0.37 10
rs13252298
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.827 0.160 8 127082911 non coding transcript exon variant A/G snv 0.24 7