Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs16949649
NME1 ; NME1-NME2
0.776 0.200 17 51152947 upstream gene variant T/C snv 0.39 12
rs1695
GSTP1
0.457 0.880 11 67585218 missense variant A/G snv 0.34 0.36 187
rs174538
TMEM258 ; MIR611 ; FEN1
0.701 0.440 11 61792609 5 prime UTR variant G/A snv 0.34 0.26 19
rs17655
BIVM-ERCC5 ; ERCC5
0.597 0.560 13 102875652 missense variant G/C snv 0.28 0.30 52
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs1800470
TGFB1
0.515 0.840 19 41353016 missense variant G/A;C snv 0.55; 2.4E-04 106
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 118
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37 22
rs20541
IL13 ; TH2LCRR
0.585 0.720 5 132660272 missense variant A/G snv 0.72 0.77 47
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 53
rs2231142
ABCG2
0.583 0.680 4 88131171 missense variant G/C;T snv 4.0E-06; 0.12 54
rs2236338
GZMB
0.851 0.120 14 24631076 missense variant A/G snv 0.24 0.25 6
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 22
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs2294008
PSCA ; JRK
0.672 0.320 8 142680513 5 prime UTR variant C/T snv 0.46 0.45 27
rs2302254
NME1-NME2 ; NME1
0.752 0.240 17 51153539 5 prime UTR variant C/T snv 0.22 15
rs2607775
XPC ; LSM3
0.807 0.160 3 14178595 5 prime UTR variant C/G snv 0.42 0.43 8
rs2839698
MRPL23 ; MIR675 ; H19
0.662 0.520 11 1997623 non coding transcript exon variant G/A snv 0.41 25
rs290481
TCF7L2
0.827 0.200 10 113164066 intron variant C/T snv 0.20 8
rs2976392
JRK ; PSCA
0.724 0.240 8 142681514 3 prime UTR variant G/A snv 0.46 0.45 15
rs3020449
ESR2
0.807 0.200 14 64306674 intron variant A/G;T snv 10
rs34214448
NME1 ; NME1-NME2
0.851 0.120 17 51154651 intron variant G/T snv 0.39 7
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 55
rs371074389
LOC112268426 ; CXCR4
0.732 0.320 2 136115226 synonymous variant C/T snv 4.0E-06 4.2E-05 16