Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs4938723
MIR34C ; BTG4 ; MIR34B ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32 60
rs1143633
IL1B
0.752 0.280 2 112832890 intron variant C/G;T snv 10
rs3917356
IL1B
0.882 0.160 2 112834786 intron variant C/T snv 0.39 4
rs290481
TCF7L2
0.827 0.200 10 113164066 intron variant C/T snv 0.20 8
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs7628626
TIMMDC1 ; CD80
0.925 0.120 3 119525574 3 prime UTR variant A/C snv 0.82 2
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 55
rs20541
IL13 ; TH2LCRR
0.585 0.720 5 132660272 missense variant A/G snv 0.72 0.77 47
rs16893344
CCN4
0.807 0.160 8 133194036 intron variant C/T snv 0.29 6
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 53
rs10053538
HAVCR2
0.807 0.160 5 157110499 intron variant C/A;T snv 7
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 55
rs3741219
MRPL23 ; H19 ; HOTS
0.776 0.280 11 1995389 non coding transcript exon variant A/G snv 0.42 10
rs2839698
MRPL23 ; MIR675 ; H19
0.662 0.520 11 1997623 non coding transcript exon variant G/A snv 0.41 25
rs6691378
CHI3L1
0.882 0.160 1 203187994 upstream gene variant G/A snv 0.19 6
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 118
rs1051740
EPHX1
0.592 0.760 1 225831932 missense variant T/C snv 0.32 0.27 56
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 15
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 22
rs9679162
GALNT14
0.882 0.120 2 31024648 intron variant G/T snv 0.48 4
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37 22