DisGeNET - a database of gene-disease associations

List of shared variants

Liver carcinoma, C2239176

Disease: Secondary malignant neoplasm of lymph node

Source: BEFREE ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs10053538	HAVCR2	0.807	0.160	5	157110499	intron variant	C/A;T	snv			7
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs10814325	RECK	0.827	0.200	9	36036597	upstream gene variant	T/A;C;G	snv			7
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			213
rs1143633	IL1B	0.752	0.280	2	112832890	intron variant	C/G;T	snv			10
rs13181	KLC3 ; ERCC2	0.487	0.760	19	45351661	stop gained	T/A;G	snv	4.0E-06; 0.32		134
rs1800470	TGFB1	0.515	0.840	19	41353016	missense variant	G/A;C	snv	0.55; 2.4E-04		106
rs1800624	PBX2 ; AGER	0.658	0.480	6	32184610	upstream gene variant	A/G;T	snv			33
rs2064863	AURKA	0.925	0.120	20	56387716	intron variant	T/A;C;G	snv			4
rs2249825	HMGB1	0.695	0.440	13	30463766	5 prime UTR variant	G/A;C;T	snv			22
rs2839698	MRPL23 ; MIR675 ; H19	0.662	0.520	11	1997623	non coding transcript exon variant	G/A	snv	0.41		25
rs3741219	MRPL23 ; H19 ; HOTS	0.776	0.280	11	1995389	non coding transcript exon variant	A/G	snv	0.42		10
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs699947	VEGFA	0.570	0.680	6	43768652	upstream gene variant	A/C;T	snv			67
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs1047781	LOC105447645 ; FUT2	0.790	0.200	19	48703374	missense variant	A/T	snv	3.6E-02	1.2E-02	9
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs61573157	ADAMTS14	0.882	0.160	10	70760503	missense variant	C/T	snv	8.6E-02	7.5E-02	6
rs145204276	ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76	0.658	0.320	1	173868254	splice donor variant	CAAGG/-	delins		8.8E-02	31
rs7963551	RAD52	0.807	0.160	12	912349	3 prime UTR variant	T/G	snv		0.13	7
rs6691378	CHI3L1	0.882	0.160	1	203187994	upstream gene variant	G/A	snv		0.19	6
rs12774070	ADAMTS14	0.925	0.120	10	70753879	missense variant	C/A;G	snv	0.23	0.19	4
rs290481	TCF7L2	0.827	0.200	10	113164066	intron variant	C/T	snv		0.20	8
rs1052133	OGG1 ; CAMK1	0.476	0.800	3	9757089	missense variant	C/G	snv	0.27	0.22	147
rs351855	FGFR4	0.597	0.560	5	177093242	missense variant	G/A	snv	0.33	0.26	55