Gene: PCAT1 ×
Source: ALL
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs10505474
rs10505474
POU5F1B ; CASC8 ; PCAT1
3 0.925 0.080 8 127405259 intron variant T/C snv 0.47 0.010 1.000 1 2014 2014
dbSNP: rs12334903
rs12334903
PCAT1 ; LOC105375751
2 0.925 0.080 8 127038268 intron variant T/C snv 0.44 0.010 1.000 1 2010 2010
dbSNP: rs16901946
rs16901946
PCAT1 ; PRNCR1 ; CASC19
8 0.827 0.160 8 127088680 non coding transcript exon variant A/G snv 1.7E-02 0.010 1.000 1 2018 2018
dbSNP: rs1902432
rs1902432
PCAT1 ; LOC105375751
4 0.851 0.120 8 127012566 intron variant A/G snv 0.25 0.010 1.000 1 2018 2018
dbSNP: rs378854
rs378854
CASC8 ; PCAT1 ; CASC21
2 0.925 0.080 8 127311574 non coding transcript exon variant C/T snv 0.31 0.010 1.000 1 2011 2011
dbSNP: rs7014346
rs7014346
POU5F1B ; CASC8 ; PCAT1
14 0.732 0.240 8 127412547 intron variant A/G snv 0.63 0.010 1.000 1 2015 2015
dbSNP: rs7463708
rs7463708
PCAT1 ; PRNCR1 ; CASC19
7 0.807 0.120 8 127091810 non coding transcript exon variant G/T snv 0.27 0.010 1.000 1 2011 2011
dbSNP: rs7824364
rs7824364
PCAT1 ; CASC19
2 0.925 0.080 8 127123120 intron variant T/C snv 7.9E-02 0.010 1.000 1 2017 2017
dbSNP: rs980171
rs980171
PCAT1 ; LOC105375751
2 0.925 0.080 8 127042277 intron variant A/G snv 0.45 0.010 1.000 1 2010 2010
dbSNP: rs13281615
rs13281615
POU5F1B ; CASC8 ; PCAT1 ; CASC21
18 0.716 0.360 8 127343372 intron variant A/G snv 0.43 0.020 1.000 2 2008 2009
dbSNP: rs7837328
rs7837328
POU5F1B ; CASC8 ; PCAT1
8 0.882 0.120 8 127410882 intron variant A/G snv 0.52 0.020 1.000 2 2014 2014
dbSNP: rs16901966
rs16901966
PCAT1 ; CASC19
3 0.925 0.080 8 127098007 intron variant A/G snv 0.13 0.030 1.000 3 2012 2016
dbSNP: rs620861
rs620861
POU5F1B ; CASC8 ; PCAT1 ; CASC21
3 0.925 0.080 8 127323428 intron variant G/A snv 0.36 0.030 0.667 3 2009 2017
dbSNP: rs1016343
rs1016343
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
8 0.807 0.240 8 127081052 non coding transcript exon variant C/T snv 0.20 0.700 1.000 4 2007 2015
dbSNP: rs10086908
rs10086908
PCAT1 ; LOC105375751
1 1.000 0.080 8 126999692 intron variant T/C snv 0.28 0.700 1.000 2 2015 2019
dbSNP: rs445114
rs445114
CASC8 ; PCAT1 ; CASC21
3 0.882 0.160 8 127310936 intron variant T/A;C snv 0.700 1.000 2 2009 2011
dbSNP: rs1016342
rs1016342
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
1 1.000 0.080 8 127080210 non coding transcript exon variant C/G;T snv 0.700 1.000 1 2007 2007
dbSNP: rs1031588
rs1031588
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
1 1.000 0.080 8 127081032 non coding transcript exon variant C/A snv 0.24 0.700 1.000 1 2007 2007
dbSNP: rs10505477
rs10505477
POU5F1B ; CASC8 ; PCAT1
31 0.658 0.400 8 127395198 intron variant A/G snv 0.40 0.700 1.000 1 2014 2014
dbSNP: rs10505483
rs10505483
PCAT1 ; CASC19
2 0.925 0.080 8 127112950 intron variant C/T snv 0.16 0.700 1.000 1 2012 2012
dbSNP: rs12682344
rs12682344
PCAT1 ; CASC19
1 1.000 0.080 8 127094539 intron variant T/G snv 0.13 0.700 1.000 1 2014 2014
dbSNP: rs1378897
rs1378897
PCAT1 ; CASC19
2 0.925 0.080 8 127110414 intron variant C/T snv 5.7E-02 0.700 1.000 1 2007 2007
dbSNP: rs138042437
rs138042437
PCAT1 ; CASC19
1 1.000 0.080 8 127196124 intron variant A/G snv 4.0E-03 0.700 1.000 1 2016 2016
dbSNP: rs1456305
rs1456305
PCAT1 ; CASC19
1 1.000 0.080 8 127115007 intron variant G/A snv 0.88 0.700 1.000 1 2007 2007
dbSNP: rs1456306
rs1456306
PCAT1 ; CASC19
2 0.925 0.080 8 127104255 intron variant G/A snv 0.23 0.700 1.000 1 2007 2007