Gene: PCAT1 ×
Source: ALL
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs6983561
rs6983561
PCAT1 ; CASC19
3 0.925 0.080 8 127094635 intron variant A/C snv 0.17 0.780 1.000 10 2008 2017
dbSNP: rs16901966
rs16901966
PCAT1 ; CASC19
3 0.925 0.080 8 127098007 intron variant A/G snv 0.13 0.030 1.000 3 2012 2016
dbSNP: rs188140481
rs188140481
PCAT1 ; CASC19
4 0.925 0.080 8 127179427 non coding transcript exon variant T/A;C snv 0.720 1.000 3 2012 2015
dbSNP: rs620861
rs620861
POU5F1B ; CASC8 ; PCAT1 ; CASC21
3 0.925 0.080 8 127323428 intron variant G/A snv 0.36 0.030 0.667 3 2009 2017
dbSNP: rs10086908
rs10086908
PCAT1 ; LOC105375751
1 1.000 0.080 8 126999692 intron variant T/C snv 0.28 0.700 1.000 2 2015 2019
dbSNP: rs116041037
rs116041037
PCAT1 ; CASC19
2 0.925 0.080 8 127119564 intron variant G/A snv 1.0E-02 0.710 1.000 2 2015 2015
dbSNP: rs1016342
rs1016342
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
1 1.000 0.080 8 127080210 non coding transcript exon variant C/G;T snv 0.700 1.000 1 2007 2007
dbSNP: rs1031588
rs1031588
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
1 1.000 0.080 8 127081032 non coding transcript exon variant C/A snv 0.24 0.700 1.000 1 2007 2007
dbSNP: rs10505474
rs10505474
POU5F1B ; CASC8 ; PCAT1
3 0.925 0.080 8 127405259 intron variant T/C snv 0.47 0.010 1.000 1 2014 2014
dbSNP: rs10505483
rs10505483
PCAT1 ; CASC19
2 0.925 0.080 8 127112950 intron variant C/T snv 0.16 0.700 1.000 1 2012 2012
dbSNP: rs12334903
rs12334903
PCAT1 ; LOC105375751
2 0.925 0.080 8 127038268 intron variant T/C snv 0.44 0.010 1.000 1 2010 2010
dbSNP: rs12682344
rs12682344
PCAT1 ; CASC19
1 1.000 0.080 8 127094539 intron variant T/G snv 0.13 0.700 1.000 1 2014 2014
dbSNP: rs1378897
rs1378897
PCAT1 ; CASC19
2 0.925 0.080 8 127110414 intron variant C/T snv 5.7E-02 0.700 1.000 1 2007 2007
dbSNP: rs138042437
rs138042437
PCAT1 ; CASC19
1 1.000 0.080 8 127196124 intron variant A/G snv 4.0E-03 0.700 1.000 1 2016 2016
dbSNP: rs1456305
rs1456305
PCAT1 ; CASC19
1 1.000 0.080 8 127115007 intron variant G/A snv 0.88 0.700 1.000 1 2007 2007
dbSNP: rs1456306
rs1456306
PCAT1 ; CASC19
2 0.925 0.080 8 127104255 intron variant G/A snv 0.23 0.700 1.000 1 2007 2007
dbSNP: rs1456314
rs1456314
PCAT1
1 1.000 0.080 8 127063445 intron variant A/G snv 0.64 0.700 1.000 1 2007 2007
dbSNP: rs1551510
rs1551510
PCAT1 ; PRNCR1 ; CASC19 ; PCAT2
1 1.000 0.080 8 127081233 non coding transcript exon variant C/T snv 0.56 0.700 1.000 1 2007 2007
dbSNP: rs16901814
rs16901814
PCAT1 ; LOC105375751
1 1.000 0.080 8 126869707 intron variant G/A snv 0.17 0.700 1.000 1 2019 2019
dbSNP: rs16902104
rs16902104
POU5F1B ; CASC8 ; PCAT1 ; CASC21
1 1.000 0.080 8 127328663 intron variant C/G;T snv 0.700 1.000 1 2015 2015
dbSNP: rs17831626
rs17831626
PCAT1
1 1.000 0.080 8 127068178 intron variant G/T snv 0.31 0.700 1.000 1 2007 2007
dbSNP: rs183373024
rs183373024
PCAT1 ; PRNCR1 ; CASC19
1 1.000 0.080 8 127091872 non coding transcript exon variant A/G snv 4.5E-03 0.700 1.000 1 2018 2018
dbSNP: rs378854
rs378854
CASC8 ; PCAT1 ; CASC21
2 0.925 0.080 8 127311574 non coding transcript exon variant C/T snv 0.31 0.010 1.000 1 2011 2011
dbSNP: rs4506170
rs4506170
CASC8 ; PCAT1 ; CASC21
1 1.000 0.080 8 127311646 non coding transcript exon variant T/C snv 0.15 0.700 1.000 1 2016 2016
dbSNP: rs56005245
rs56005245
PCAT1 ; CASC19
1 1.000 0.080 8 127101181 intron variant C/T snv 0.24 0.700 1.000 1 2016 2016