Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10000
Gene Symbol: AKT3
AKT3
0.010 Biomarker disease BEFREE The insulin signaling pathway was further analyzed for its close connections to Wnt and MAPK signaling pathways as well as for the containing of thymoma viral proto-oncogene-3 (Akt3) and glycogen synthase kinase-3 beta (Gsk3b), which were both target genes predicted by most DE miRNA. 29766503 2018
Entrez Id: 284
Gene Symbol: ANGPT1
ANGPT1
0.010 AlteredExpression disease BEFREE VEGFR1 and VEGFR2 were expressed in vessels of all analysed tumour entities, and at higher levels in epithelial cells of A and B3 thymomas and TSQCCs. mRNA of Ang-2, but not of Ang-1, was significantly up-regulated in all thymoma subtypes, with the highest levels being found in A thymomas. 27791295 2017
Entrez Id: 285
Gene Symbol: ANGPT2
ANGPT2
0.010 AlteredExpression disease BEFREE VEGFR1 and VEGFR2 were expressed in vessels of all analysed tumour entities, and at higher levels in epithelial cells of A and B3 thymomas and TSQCCs. mRNA of Ang-2, but not of Ang-1, was significantly up-regulated in all thymoma subtypes, with the highest levels being found in A thymomas. 27791295 2017
Entrez Id: 361
Gene Symbol: AQP4
AQP4
0.010 Biomarker disease BEFREE Western blot revealed that lysates of nine of the ten thymoma specimens reacted with anti-human AQP4 antibody with a band of ~30 kDa compatible with the molecular weight of AQP4. 20728226 2010
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.010 Biomarker disease BEFREE Genes in histone modification [BAP1 (n = 6; 13%), SETD2 (n = 5; 11%), ASXL1 (n = 2; 4%)], chromatin remodeling [SMARCA4 (n = 2; 4%)], and DNA methylation [DNMT3A (n = 3; 7%), TET2 (n = 2; 4%), WT1 (n = 2; 4%)] pathways were recurrently mutated in TCs, but not in thymomas. 25482724 2014
Entrez Id: 472
Gene Symbol: ATM
ATM
0.010 Biomarker disease BEFREE We have applied spectral karyotyping (SKY) to chemically induced plasmocytomas, mammary gland tumours from transgenic mice overexpressing the c-myc oncogene and thymomas from mice deficient for the ataxia telangiectasia (Atm) gene. 8896561 1996
Entrez Id: 9212
Gene Symbol: AURKB
AURKB
0.010 Biomarker disease BEFREE Serine/threonine protein kinase v-akt murine thymoma viral oncogene homolog (Akt) is one of the survival kinases with multiple biological functions in the brain and throughout the body. 22771711 2012
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.310 Biomarker disease BEFREE Genes in histone modification [BAP1 (n = 6; 13%), SETD2 (n = 5; 11%), ASXL1 (n = 2; 4%)], chromatin remodeling [SMARCA4 (n = 2; 4%)], and DNA methylation [DNMT3A (n = 3; 7%), TET2 (n = 2; 4%), WT1 (n = 2; 4%)] pathways were recurrently mutated in TCs, but not in thymomas. 25482724 2014
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.310 Biomarker disease CTD_human A specific missense mutation in GTF2I occurs at high frequency in thymic epithelial tumors. 24974848 2014
Entrez Id: 581
Gene Symbol: BAX
BAX
0.010 Biomarker disease BEFREE The protein level changes of p27, p21, Caspase 3 (CASP3), B cell lymphoma 2 (BCL2), BCL2-associated X protein (BAX), and v-AKT murine thymoma viral oncogene (AKT) were detected by Western blot. 28057912 2017
Entrez Id: 400500
Gene Symbol: BCAR4
BCAR4
0.010 Biomarker disease BEFREE In BCAR4-expressing cells, phosphorylation of v-erb-b2 erythroblastic leukaemia viral oncogene homolog (ERBB)2, ERBB3, and their downstream mediators extracellular signal-regulated kinase 1/2 and v-akt murine thymoma viral oncogene homolog (AKT) 1/2, was increased. 20859285 2010
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 AlteredExpression disease BEFREE Expression of bcl-2 protein was analysed in 30 cases of thymoma by immunohistological staining of paraffin-embedded tissue. 8522289 1995
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.010 GeneticVariation disease BEFREE TP53 and BCOR were the most frequently mutated genes in TCA and B3 thymomas, respectively. 25299233 2015
Entrez Id: 648
Gene Symbol: BMI1
BMI1
0.010 AlteredExpression disease BEFREE Gankyrin deficiency decreased the expression of Bmi1, a downstream molecule of c-Myc, and the activity of V-Akt murine thymoma viral oncogene homolog and extracellular signal-regulated protein kinase, leading to reduced Apc inactivation-induced tumorigenesis. 30513515 2019
Entrez Id: 650
Gene Symbol: BMP2
BMP2
0.020 GeneticVariation disease BEFREE In the two thymoma patients in our family, targeted sequencing of RAD51L1 and BMP2 genes in and near the translocation site of chromosome 14 and 20 previously reported in two thymoma families, did not find any pathogenic mutation. 26344711 2015
Entrez Id: 650
Gene Symbol: BMP2
BMP2
0.020 Biomarker disease BEFREE Dysregulation of RAD51L1 and/or BMP2 may explain this familial occurrence of thymomas and autoimmune diseases. 15942943 2005
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.010 AlteredExpression disease BEFREE We analyzed mutations in FGFR3, phosphoinositide 3 kinase catalytic alpha polypeptide (PIK3CA), v-akt murine thymoma viral oncogene homolog 1 (AKT1), v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS), v-Ha-ras Harvey rat sarcoma viral oncogene homolog (HRAS), and v-raf murine sarcoma viral oncogene homolog B1 (BRAF) in 88 urothelial cell carcinomas and the immunohistochemical expression of phospho-v-akt murine thymoma viral oncogene homolog (AKT) and mitogen-activated protein kinase 1 and 2 (pERK1/2) in 80 and 77 urothelial cell carcinomas, respectively. 22417847 2012
Entrez Id: 23476
Gene Symbol: BRD4
BRD4
0.010 Biomarker disease BEFREE Based on available data, the most popular and active regimens are cisplatin-anthracycline (CAP or ADOC) or cisplatin-etoposide combinations that should be recommended when considering first-line chemotherapy in thymoma or thymic carcinoma. 30527189 2018
Entrez Id: 796
Gene Symbol: CALCA
CALCA
0.010 Biomarker disease BEFREE Functional expression of receptors for calcitonin gene-related peptide, calcitonin, and vasoactive intestinal peptide in the human thymus and thymomas from myasthenia gravis patients. 9973484 1999
Entrez Id: 820
Gene Symbol: CAMP
CAMP
0.010 Biomarker disease BEFREE Multidisciplinary treatment using induction CAMP therapy and surgical resection for thymoma patients with pleural dissemination was effective and feasible. 30725276 2019
Entrez Id: 10487
Gene Symbol: CAP1
CAP1
0.010 Biomarker disease BEFREE Based on available data, the most popular and active regimens are cisplatin-anthracycline (CAP or ADOC) or cisplatin-etoposide combinations that should be recommended when considering first-line chemotherapy in thymoma or thymic carcinoma. 30527189 2018
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.020 Biomarker disease BEFREE The present study investigated, for the first time in the rabbit model, the effect of adding α-tocopherol (0, 100, 200 and 400µM) during IVM on putative transcripts involved in antioxidant defence (superoxide dismutase 2, mitochondrial (SOD2), glutathione peroxidase 1 (GPX1), catalase (CAT)), cell cycle regulation and apoptosis cascade (apoptosis tumour protein 53 (TP53), caspase 3, apoptosis-related cysteine protease (CASP3)), cell cycle progression (cellular cycle V-Akt murine thymoma viral oncogene homologue 1 (AKT1)), cumulus expansion (gap junction protein, alpha 1, 43 kDa (GJA1) and prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclo-oxygenase) (PTGS2)) and metabolism (glucose-6-phosphate dehydrogenase (G6PD)). 29966585 2018
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.020 AlteredExpression disease BEFREE Expression of apoptosis-associated proteins (including cleaved caspase-3 and cleaved poly-ADP ribose polymerase [PARP]) and activation of the phosphatidylinositol 3-kinase (PI3K)/v-akt murine thymoma viral oncogene homologue 1 (AKT) signalling pathway were detected by Western blotting. 23613505 2013
Entrez Id: 847
Gene Symbol: CAT
CAT
0.010 Biomarker disease BEFREE The present study investigated, for the first time in the rabbit model, the effect of adding α-tocopherol (0, 100, 200 and 400µM) during IVM on putative transcripts involved in antioxidant defence (superoxide dismutase 2, mitochondrial (SOD2), glutathione peroxidase 1 (GPX1), catalase (CAT)), cell cycle regulation and apoptosis cascade (apoptosis tumour protein 53 (TP53), caspase 3, apoptosis-related cysteine protease (CASP3)), cell cycle progression (cellular cycle V-Akt murine thymoma viral oncogene homologue 1 (AKT1)), cumulus expansion (gap junction protein, alpha 1, 43 kDa (GJA1) and prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclo-oxygenase) (PTGS2)) and metabolism (glucose-6-phosphate dehydrogenase (G6PD)). 29966585 2018
Entrez Id: 859
Gene Symbol: CAV3
CAV3
0.010 GeneticVariation disease BEFREE Rare cases of acquired rippling muscle disease with abnormal caveolin-3 localisation have been reported, without primary caveolin-3 mutations and in association with myasthenia gravis and acetylcholine receptor autoantibodies, or thymoma. 21295981 2011