Source: ALL
Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 Biomarker disease BEFREE Using quantitative real-time polymerase chain reaction to detect the presence of Chlamydia trachomatis (CT) 16S rRNA and human interleukin (IL)-1beta, IL-10, IL-12p40, interferon (IFN)-gamma and tumour necrosis factor (TNF)-alpha transcripts we examined the immune response at the conjunctival surface in a cohort of children living in a trachoma-endemic village in The Gambia. 16232223 2005
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 AlteredExpression disease BEFREE Proinflammatory (tumor necrosis factor alpha and interleukin-1beta [IL-1beta]), anti-inflammatory (IL-10), and fibrogenic (matrix metalloprotease 9) gene expression was increased in active trachoma. 15557667 2004
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 AlteredExpression disease BEFREE To investigate the importance of TNF-alpha gene promoter polymorphisms and TNF-alpha levels in tear fluid in scarring trachoma, a large matched-pair case-control study was performed in The Gambia. 9038309 1997
Entrez Id: 55294
Gene Symbol: FBXW7
FBXW7
0.020 Biomarker disease BEFREE The results of the present study showed that in 2008, trachoma had a low prevalence (3.4%) among schoolchildren in the urban area of Marajó Archipelago; eight years after the first evaluation and the introduction of control and prevention measures (SAFE strategy), there was a drastic reduction in the number of cases (0.2%), demonstrating the need for constant monitoring and effective measures for the elimination of trachoma. 29447155 2018
Entrez Id: 55294
Gene Symbol: FBXW7
FBXW7
0.020 Biomarker disease BEFREE Risk factors for active trachoma and ocular Chlamydia trachomatis infection in treatment-naïve trachoma-hyperendemic communities of the Bijagós Archipelago, Guinea Bissau. 24967629 2014
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE In support of these findings, anti-inflammatory cytokine IL-1 receptor antagonist (IL-1Ra) was negatively associated with chronic scarring trachoma (r = -0.249, P = 0.001). 18628987 2008
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.020 Biomarker disease BEFREE Using quantitative real-time polymerase chain reaction to detect the presence of Chlamydia trachomatis (CT) 16S rRNA and human interleukin (IL)-1beta, IL-10, IL-12p40, interferon (IFN)-gamma and tumour necrosis factor (TNF)-alpha transcripts we examined the immune response at the conjunctival surface in a cohort of children living in a trachoma-endemic village in The Gambia. 16232223 2005
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 AlteredExpression disease BEFREE Proinflammatory (tumor necrosis factor alpha and interleukin-1beta [IL-1beta]), anti-inflammatory (IL-10), and fibrogenic (matrix metalloprotease 9) gene expression was increased in active trachoma. 15557667 2004
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.020 AlteredExpression disease BEFREE Proinflammatory (tumor necrosis factor alpha and interleukin-1beta [IL-1beta]), anti-inflammatory (IL-10), and fibrogenic (matrix metalloprotease 9) gene expression was increased in active trachoma. 15557667 2004
Entrez Id: 4477
Gene Symbol: MSMB
MSMB
0.010 Biomarker disease BEFREE The effect of biannual versus annual azithromycin distribution for trachoma control on serological response to merozoite surface protein 1 (MSP-1<sub>19</sub>), a surrogate for malaria incidence, was evaluated among children in Niger. 31796025 2019
Entrez Id: 84000
Gene Symbol: TMPRSS13
TMPRSS13
0.010 Biomarker disease BEFREE The effect of biannual versus annual azithromycin distribution for trachoma control on serological response to merozoite surface protein 1 (MSP-1<sub>19</sub>), a surrogate for malaria incidence, was evaluated among children in Niger. 31796025 2019
Entrez Id: 4485
Gene Symbol: MST1
MST1
0.010 Biomarker disease BEFREE The effect of biannual versus annual azithromycin distribution for trachoma control on serological response to merozoite surface protein 1 (MSP-1<sub>19</sub>), a surrogate for malaria incidence, was evaluated among children in Niger. 31796025 2019
Entrez Id: 89782
Gene Symbol: LMLN
LMLN
0.010 Biomarker disease BEFREE The effect of biannual versus annual azithromycin distribution for trachoma control on serological response to merozoite surface protein 1 (MSP-1<sub>19</sub>), a surrogate for malaria incidence, was evaluated among children in Niger. 31796025 2019
Entrez Id: 1731
Gene Symbol: SEPTIN1
SEPTIN1
0.010 Biomarker disease BEFREE Of those enrolled, 25 717 (98·2%) received the trachoma regimen and 25 819 (98·6%) received the first dose of the scabies regimen between Sept 1, and Oct 2, 2015. 30223985 2018
Entrez Id: 406947
Gene Symbol: MIR155
MIR155
0.010 Biomarker disease BEFREE We investigated whether the single or combined expression of miR-147b, miR-1285, miR-155 and miR-184 was able to identify individuals with increased risk of incident or progressive scarring trachoma. 28175294 2017
Entrez Id: 100126311
Gene Symbol: MIR147B
MIR147B
0.010 AlteredExpression disease BEFREE We investigated whether the single or combined expression of miR-147b, miR-1285, miR-155 and miR-184 was able to identify individuals with increased risk of incident or progressive scarring trachoma. 28175294 2017
Entrez Id: 406960
Gene Symbol: MIR184
MIR184
0.010 Biomarker disease BEFREE We investigated whether the single or combined expression of miR-147b, miR-1285, miR-155 and miR-184 was able to identify individuals with increased risk of incident or progressive scarring trachoma. 28175294 2017
Entrez Id: 3822
Gene Symbol: KLRC2
KLRC2
0.010 Biomarker disease BEFREE We found no evidence for an association between the numbers of KLRC2 gene copies and the clinical manifestations of trachoma (follicular trachoma or conjunctival scarring). 27312142 2016
Entrez Id: 3804
Gene Symbol: KIR2DL3
KIR2DL3
0.010 Biomarker disease BEFREE Conjunctival scarring in trachoma is associated with the HLA-C ligand of KIR and is exacerbated by heterozygosity at KIR2DL2/KIR2DL3. 24651768 2014
Entrez Id: 3803
Gene Symbol: KIR2DL2
KIR2DL2
0.010 GeneticVariation disease BEFREE Conjunctival scarring in trachoma is associated with the HLA-C ligand of KIR and is exacerbated by heterozygosity at KIR2DL2/KIR2DL3. 24651768 2014
Entrez Id: 3107
Gene Symbol: HLA-C
HLA-C
0.010 Biomarker disease BEFREE Conjunctival scarring in trachoma is associated with the HLA-C ligand of KIR and is exacerbated by heterozygosity at KIR2DL2/KIR2DL3. 24651768 2014
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 Biomarker disease BEFREE These data are consistent with a role for IL-17A in orchestrating the proinflammatory response in trachoma. 21911461 2011
Entrez Id: 283297
Gene Symbol: OR10A4
OR10A4
0.010 GeneticVariation disease BEFREE The objective was to investigate whether haptoglobin (Hp) haplotypes constructed from the functional polymorphism (Hp1/Hp2) plus the functional promoter SNPs -61A-C (rs5471) and -101C-G (rs5470), or sickle cell trait (HbAS, rs334) were associated with risk of active trachoma when stratified by age and sex, in rural Gambian children. 20552021 2010
Entrez Id: 3240
Gene Symbol: HP
HP
0.010 GeneticVariation disease BEFREE These data indicate that genetic variation in Hp may affect susceptibility to active trachoma differentially by sex in The Gambia. 20552021 2010
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.010 Biomarker disease BEFREE The data suggest that HLA-DRB*11 may offer protection from trichiasis in trachoma hyperendemic villages. 18824733 2009