Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 GeneticVariation group BEFREE Our study provided additional understanding of the genetic etiology of NSCL/P and underlined the importance of considering gene-gene interaction in the etiology of this common craniofacial malformation. 29341488 2018
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE Mutations of the human PAX6 gene underlie aniridia (congenital absence of the iris), a rare dominant malformation of the eye. 9931324 1999
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE Establishment of a human iPSC line (SDQLCHi010-A) from a patient with optic nerve malformation carrying a heterozygous mutation in PAX6 gene. 31707209 2019
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE This finding demonstrated that the frequency of PAX6 mutations associated with optic nerve malformation is low, requiring the elucidation of other candidate genes in other patients. 16604056 2006
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 Biomarker group BEFREE The GREM1 is involved in the etiology of NSCL±P in the Brazilian population and reveal that the interaction between GREM1 and NTN1 may be related with the pathogenesis of this common craniofacial malformation. 30402937 2019
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE The wide variability of ocular phenotype regardless of the presence or absence of PAX6 mutations calls for a further appreciation of the complexity in the molecular diagnosis of aniridia and suggests that this ocular malformation may be better regarded as a group of heterogeneous disorders, rather than a single disease entity, associated with mutations in PAX6 and/or other genes located elsewhere in the human genome. 22361317 2012
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 GeneticVariation group BEFREE Non-syndromic cleft lip with or without cleft palate (NSCL/P) is the most common craniofacial malformation, with an incidence of about 1/700 live births, although variable according to ethnicity. 24942095 2014
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 GeneticVariation group BEFREE In combination with results from our previous study using the same sample, our data suggest that the majority of the known NSCL/P susceptibility regions identified to date also confer risk for this malformation in the Mesoamerican population. 24382704 2014
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 GeneticVariation group BEFREE Non-syndromic cleft lip with or without cleft palate (NSCL/P) is a common structural malformation with a complex and multifactorial aetiology. 24606907 2014
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE We identified a novel PAX6 mutation in a family with severe ocular malformation. 22621390 2012
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 Biomarker group BEFREE PAX6 haploinsufficiency causes cerebral malformation and olfactory dysfunction in humans. 11431688 2001
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES) is a rare autosomal dominant disease caused by FOXL2 gene mutations, and it is clinically characterized by an eyelid malformation associated (type I) or not (type II) with premature ovarian failure (POF). 29339661 2018
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis syndrome (BPES), an autosomal dominant syndrome in which an eyelid malformation is associated (type I) or not (type II) with premature ovarian failure (POF), has recently been ascribed to mutations in FOXL2, a putative forkhead transcription factor gene. 12529855 2003
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES), an autosomal dominant syndrome in which an eyelid malformation is associated (type I) or not (type II) with premature ovarian failure (POF), has recently been ascribed to mutations in the forkhead transcription factor 2 (FOXL2) gene. 15450400 2004
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Mutations of the FOXL2 gene have been shown to cause blepharophimosis syndrome (BPES), characterized by an eyelid malformation associated with premature ovarian failure or not. 18372316 2008
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Mutations in FOXL2 are known to cause blepharophimosis syndrome (BPES), an autosomal dominant eyelid malformation associated (type I) or not (type II) with ovarian dysfunction, leading to premature ovarian failure (POF). 18726931 2009
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis syndrome (BPES) is an autosomal dominant genetic condition resulting from heterozygous mutations in the FOXL2 gene and clinically characterized by an eyelid malformation associated (type I) or not (type II) with premature ovarian failure. 26100530 2016
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 Biomarker group BEFREE The finding of a single heterozygous mutation at the PDS gene in a further eight was strongly suggestive of a critical role for pendrin, the protein product of the PDS gene, in the generation of enlarged vestibular aqueducts in at least 86% (49/57 cases) of patients with this radiological malformation. 10700480 2000
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Mutations in the chromodomain helicase DNA binding protein 7 gene (CHD7) lead to CHARGE syndrome, an autosomal dominant multiple malformation disorder. 23285124 2012
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Although we postulated that the non-synonymous SEMA3A variants which we found in CHD7-negative CHARGE patients alone are not sufficient to produce the phenotype, we suggest an important modifier role for SEMA3A in the pathogenesis of this multiple malformation syndrome. 24728844 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE Cochlear malformation was a consistent finding among siblings with the same SLC26A4 mutations. 24338212 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE The most common malformation found in cases with EVA was incomplete partition type II (IP-II; 90.4%). 31124731 2019
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE These results suggest that homozygous mutations in SLC26A4 are always associated with EVA, while the severity of cochlear malformation may vary depending on the type of SLC26A4 mutation. 25468468 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE All subjects except for two in the SLC26A4 group had concurrent Mondini malformation and enlarged vestibular aqueduct. 31124793 2020
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Loss-of-function mutations in CHD7 are known to cause CHARGE syndrome, an autosomal-dominant malformation syndrome in which several organ systems, for example, the central nervous system, eye, ear, nose, and mediastinal organs, are variably involved. 22461308 2012