Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.070 GeneticVariation group BEFREE Non-syndromic cleft lip with or without cleft palate (NSCL/P) is a common structural malformation with a complex and multifactorial aetiology. 24606907 2014
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE We identified a novel PAX6 mutation in a family with severe ocular malformation. 22621390 2012
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES) is a rare autosomal dominant disease caused by FOXL2 gene mutations, and it is clinically characterized by an eyelid malformation associated (type I) or not (type II) with premature ovarian failure (POF). 29339661 2018
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis syndrome (BPES), an autosomal dominant syndrome in which an eyelid malformation is associated (type I) or not (type II) with premature ovarian failure (POF), has recently been ascribed to mutations in FOXL2, a putative forkhead transcription factor gene. 12529855 2003
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES), an autosomal dominant syndrome in which an eyelid malformation is associated (type I) or not (type II) with premature ovarian failure (POF), has recently been ascribed to mutations in the forkhead transcription factor 2 (FOXL2) gene. 15450400 2004
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Mutations of the FOXL2 gene have been shown to cause blepharophimosis syndrome (BPES), characterized by an eyelid malformation associated with premature ovarian failure or not. 18372316 2008
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Mutations in FOXL2 are known to cause blepharophimosis syndrome (BPES), an autosomal dominant eyelid malformation associated (type I) or not (type II) with ovarian dysfunction, leading to premature ovarian failure (POF). 18726931 2009
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.060 GeneticVariation group BEFREE Blepharophimosis syndrome (BPES) is an autosomal dominant genetic condition resulting from heterozygous mutations in the FOXL2 gene and clinically characterized by an eyelid malformation associated (type I) or not (type II) with premature ovarian failure. 26100530 2016
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Mutations in the chromodomain helicase DNA binding protein 7 gene (CHD7) lead to CHARGE syndrome, an autosomal dominant multiple malformation disorder. 23285124 2012
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Although we postulated that the non-synonymous SEMA3A variants which we found in CHD7-negative CHARGE patients alone are not sufficient to produce the phenotype, we suggest an important modifier role for SEMA3A in the pathogenesis of this multiple malformation syndrome. 24728844 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE Cochlear malformation was a consistent finding among siblings with the same SLC26A4 mutations. 24338212 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE The most common malformation found in cases with EVA was incomplete partition type II (IP-II; 90.4%). 31124731 2019
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE These results suggest that homozygous mutations in SLC26A4 are always associated with EVA, while the severity of cochlear malformation may vary depending on the type of SLC26A4 mutation. 25468468 2014
Entrez Id: 5172
Gene Symbol: SLC26A4
SLC26A4
0.050 GeneticVariation group BEFREE All subjects except for two in the SLC26A4 group had concurrent Mondini malformation and enlarged vestibular aqueduct. 31124793 2020
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE Loss-of-function mutations in CHD7 are known to cause CHARGE syndrome, an autosomal-dominant malformation syndrome in which several organ systems, for example, the central nervous system, eye, ear, nose, and mediastinal organs, are variably involved. 22461308 2012
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE CHARGE syndrome is an autosomal dominant malformation syndrome associated with mutations in CHD7. 24214489 2014
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.050 GeneticVariation group BEFREE CHD7 variants are a well-established cause of CHARGE syndrome, a disabling multi-system malformation disorder that is often associated with deafness, visual impairment and intellectual disability. 26813943 2016
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.040 GeneticVariation group BEFREE In conclusion, we show that heterozygous loss-of-function ACTB mutations cause a distinct pleiotropic malformation syndrome with intellectual disability. 29220674 2017
Entrez Id: 5076
Gene Symbol: PAX2
PAX2
0.040 GeneticVariation group BEFREE Bilateral macular detachment caused by bilateral optic nerve malformation in a papillorenal syndrome due to a new PAX2 mutation. 18609495 2008
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.040 GeneticVariation group BEFREE The location of DCX mutations predicts malformation severity in X-linked lissencephaly. 18685874 2008
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.040 GeneticVariation group BEFREE We found consistent differences in the gyral patterns, with the malformation more severe posteriorly in individuals with LIS1 mutations and more severe anteriorly in individuals with XLIS mutations. 10430413 1999
Entrez Id: 5076
Gene Symbol: PAX2
PAX2
0.040 GeneticVariation group BEFREE The homoguanine tract in PAX2 is a hot spot for spontaneous expansion or contraction mutations and demonstrates the importance of homonucleotide tract mutations in human malformation syndromes. 10533062 1999
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.040 GeneticVariation group BEFREE In addition, 6 patients had no defined genetic defect, although the patient with subcortical band heterotopia exhibited the same pattern of malformation expected with an XLIS mutation. 16215456 2005
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.040 GeneticVariation group BEFREE Mutations in human TBX5 [corrected] cause limb and cardiac malformation in Holt-Oram syndrome. 8988165 1997
Entrez Id: 5076
Gene Symbol: PAX2
PAX2
0.040 GeneticVariation group BEFREE No significant linkage was found to 6p, where a renal and ureteric malformation locus has been reported, or to PAX2, mutations of which cause VUR in renal-coloboma syndrome. 10739767 2000