Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 238
Gene Symbol: ALK
ALK
0.100 Biomarker group BEFREE One exceptional case of a RANBP2-ALK-positive epithelioid inflammatory myofibroblastic sarcoma (an aggressive variant of IMT) showed moderate cytoplasmic staining for pan-Trk. 31578734 2019
Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
0.100 Biomarker group BEFREE SMARCA4-deficient thoracic sarcoma(DTS) is a recently identified new entity of thoracic malignancies characterized by inactivation of SMARCA4. 31097095 2019
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.100 Biomarker group BEFREE BCOR-CCNB3 fusion sarcoma is cyclin B3-positive, usually occurs in bone or soft tissue of children, and may mimic a poorly differentiated synovial sarcoma. 30633925 2019
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.100 GeneticVariation group BEFREE Secondary driver mutations in cell-cycle genes, and in particular CDKN2A (71%), are common in EWSR1-PATZ1 sarcomas in this series. 31189996 2019
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.100 Biomarker group BEFREE EWSR1-PATZ1 fusion positive spindle and round cell sarcomas show abundant intratumoral fibrosis and polyphenotypic differentiation, thus mimicking a range of tumors including desmoplastic small round cell tumor. 30379650 2019
Entrez Id: 85417
Gene Symbol: CCNB3
CCNB3
0.100 Biomarker group BEFREE Six of the eight BCOR-CCNB3 positive sarcoma patients were male. 30064235 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 Biomarker group BEFREE Although neither of these two genes have been previously associated with sarcoma, ABCB5 has been shown to share clinical drug resistance associations with melanoma and leukaemia and C16orf96 shares regulatory elements with genes that are involved with TNF-alpha mediated apoptosis in a p53/TP53-dependent manner. 31053105 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 AlteredExpression group BEFREE Exposure of sarcoma and PDX ovarian carcinoma cells to [pazopanib + entinostat] caused a prolonged activation of ERBB1 and transient/prolonged activations of ERBB2, c-KIT, and c-MET, in a cell-specific fashion. 31380285 2019
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.100 Biomarker group BEFREE BCOR genetic abnormalities have been found in some Ewing-like sarcomas. 31702654 2019
Entrez Id: 2130
Gene Symbol: EWSR1
EWSR1
0.100 Biomarker group BEFREE In the new review all the tumors were re-classified as, ES (n=16), Ewing-like tumor with EWSR1 rearrangement and amplification and possible EWSR1-NFATC2 gene fusion (n=1), CIC-rearranged sarcomas or undifferentiated sarcoma, most consistent with CIC-rearranged sarcoma (n=7), sarcoma with BCOR-alteration or undifferentiated sarcoma, consistent with BCOR-associated sarcoma (n=3), neuroblastoma (n=2), unclassifiable neoplasm with neuroblastic differentiation (n=1), malignant rhabdoid tumor (n=2), lymphoblastic lymphoma (n=1), clear cell sarcoma of the gastrointestinal tract (n=1), small cell carcinoma (n=1), sclerosing rhabdomyosarcoma (n=1), desmoplastic small round cell tumor (n=1), malignant peripheral sheath nerve tumor (n=1), poorly-differentiated synovial sarcoma (n=1), Possible gastrointestinal stromal tumor/GIST with predominant round cells (n=1) and possible SMARCA4-deficient-sarcoma (n=1). 29661713 2018
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.100 AlteredExpression group BEFREE We found that the expression of PD-L1 in sarcoma differs depending on the histologic subtype and the PD-L1 antibody clones. 30400799 2018
Entrez Id: 54880
Gene Symbol: BCOR
BCOR
0.100 Biomarker group BEFREE BCOR ITD were present in 1 uterine sarcoma diagnosed as HG-ESS and 2 undifferentiated sarcomas with uniform nuclear features, all of which lacked any of the recurrent chromosome translocations known to occur in ESS. 29200103 2018
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE In the absence of Kras mutations, injury of the muscle with global deletion of p53 results in sarcomas with amplification of chromosomal regions encompassing the Met or Yap1 gene. 30333301 2018
Entrez Id: 1019
Gene Symbol: CDK4
CDK4
0.100 AlteredExpression group BEFREE In the present study, we report that CDK4 is highly expressed in human synovial sarcoma, and high CDK4 expressions are associated with poor prognosis in sarcomas patients and the clinical stage and the TNM grade in synovial sarcoma patients. 29670090 2018
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.100 Biomarker group BEFREE Together, our findings suggest that HBc promotes tumorigenesis of hepatoma cells by enhancing the expression of total Src and the active form of the kinase and subsequently activates Src/PI3K/Akt signaling pathway, revealing novel insights into the underlying mechanisms of HBV-associated hepatocarcinogenesis.-Liu, W., Guo, T.-F., Jing, Z.-T., Yang, Z., Liu, L., Yang, Y.-P., Lin, X., Tong, Q.-Y. 29401603 2018
Entrez Id: 23152
Gene Symbol: CIC
CIC
0.100 Biomarker group BEFREE In light of morphologic features that overlap with those of NC from typical anatomical sites we have seen previously, the tumor was best classified as falling within the NC spectrum rather than CIC-associated sarcoma. 29700887 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 Biomarker group BEFREE Seven samples from six patients were eligible for molecular testing of epidermal growth factor receptor (EGFR), V-Ki-ras2 Kirsten rat sarcoma viral oncogene homologue (KRAS), v-Raf murine sarcoma viral oncogene homologue B1 (BRAF) and human epidermal growth factor receptor 2 (HER2) mutations using quantitative polymerase chain reaction (PCR) high-resolution melting curve analysis and Sanger sequencing after DNA extraction from the cell pellets of the CSF. 29306909 2018
Entrez Id: 23405
Gene Symbol: DICER1
DICER1
0.100 GeneticVariation group BEFREE In addition to the germ-line DICER1 deletion, somatic DICER1 RNase IIIb mutations were found in the CBME (c.5437G > A, p.E1813K), pCN (c.5425G > A, p.G1809R), and sarcoma (c.5125G > A, p.D1709N). 29315962 2018
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation group BEFREE The sarcoma also harbored a somatic TP53 mutation: c.844C > T, p.R282W. 29315962 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 Biomarker group BEFREE Although the phosphorylated human epidermal growth factor receptor (pEGFR/HER1) has been shown to be an independent predictor of overall survival in patients with sarcoma, we have previously demonstrated that sarcoma cell lines exhibit resistance, despite gefitinib blocking p-EGFR and signal transducers in EGFR downstream pathways. 29620166 2018
Entrez Id: 100288687
Gene Symbol: DUX4
DUX4
0.100 GeneticVariation group BEFREE Follow-up available in 22 patients showed a 5-year overall survival of 72%, which was relatively similar to ES (79%, P=0.738) and significantly better than CIC-DUX4 sarcomas (43%, P=0.005) control groups. 29300189 2018
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.100 AlteredExpression group BEFREE EGFR protein and mRNA were expressed in 13/22 patients with DFSP or DFSP-T, and increased with tumor progression, both in microdissected areas of higher-grade sarcomas and in microdissected areas of local extension. 29492209 2018
Entrez Id: 23405
Gene Symbol: DICER1
DICER1
0.100 Biomarker group BEFREE The identified combination of genetic events indicates a relationship between the intracranial tumors analyzed and DICER1 predisposition syndrome-associated sarcomas such as embryonal rhabdomyosarcoma or the recently described group of anaplastic sarcomas of the kidney. 29881993 2018
Entrez Id: 85417
Gene Symbol: CCNB3
CCNB3
0.100 Biomarker group BEFREE The DN case was a BCOR-CCNB3 fusion sarcoma. 28833375 2018
Entrez Id: 100288687
Gene Symbol: DUX4
DUX4
0.100 Biomarker group BEFREE On balance, if the following features are seen: (1) a small round blue cell tumor with histomorphology more atypical than that of Ewing sarcoma, (2) cytoplasmic CD99 staining, nuclear WT1 positivity, negative keratin, desmin and myogenin; and (3) EWSR1 rearrangement negative by FISH, then molecular testing for CIC-DUX4 sarcoma should be considered. 30353686 2018