Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs352140
rs352140
0.020 GeneticVariation BEFREE A significant genotypic and allelic association was revealed between TLR-9-rs352140 and both SLE and LN (P < 0·05). 28763101

2017

dbSNP: rs61752717
rs61752717
0.010 GeneticVariation BEFREE A single patient in the SLE-Nephritis group was compound heterozygous for M694V/M680I mutations and only one patient in the SLE-Mild group was homozygous for E148Q mutation. 25413357

2015

dbSNP: rs11893826
rs11893826
0.010 GeneticVariation BEFREE A total of 111 patients with SLE (50 with SLE without nephritis, 55 with LN and 6 with simple urinary sediment abnormalities) and 62 healthy controls (HC) were genotyped for NCX1 rs11893826 (NCX1a) and rs434082 (NCX1b) and ADD2 rs4984 SNPs. 26045217

2015

dbSNP: rs434082
rs434082
0.010 GeneticVariation BEFREE A total of 111 patients with SLE (50 with SLE without nephritis, 55 with LN and 6 with simple urinary sediment abnormalities) and 62 healthy controls (HC) were genotyped for NCX1 rs11893826 (NCX1a) and rs434082 (NCX1b) and ADD2 rs4984 SNPs. 26045217

2015

dbSNP: rs4984
rs4984
0.010 GeneticVariation BEFREE A total of 111 patients with SLE (50 with SLE without nephritis, 55 with LN and 6 with simple urinary sediment abnormalities) and 62 healthy controls (HC) were genotyped for NCX1 rs11893826 (NCX1a) and rs434082 (NCX1b) and ADD2 rs4984 SNPs. 26045217

2015

dbSNP: rs2246614
rs2246614
0.010 GeneticVariation BEFREE Additionally, rs4963128 and rs2246614 were correlated with a variety of clinical subphenotypes, such as lupus nephritis, arthritis, and the production of anti-SSA/B autoantibodies, despite a lack of significant association between these two SNPs and SLE disease susceptibility in general. 21167895

2011

dbSNP: rs2298804
rs2298804
0.010 GeneticVariation BEFREE Although we did not find any significant correlation between the rs2298804 and the incidence of lupus nephritis, rs2298804 seemed to protect against proteinunia, fever and hypocomplementaemia in patients with SLE, but appeared to be a risk factor for photosensitivity and vasculitis. 23621092

2013

dbSNP: rs352139
rs352139
0.010 GeneticVariation BEFREE Both rs352139 (p=0.040, OR: 0.713, 95%CI: 0.516-0.985) and rs352140 (p=0.048, OR: 0.723, 95%CI: 0.525-0.997) were associated with LN in dominant model. 20497632

2010

dbSNP: rs352140
rs352140
0.020 GeneticVariation BEFREE Both rs352139 (p=0.040, OR: 0.713, 95%CI: 0.516-0.985) and rs352140 (p=0.048, OR: 0.723, 95%CI: 0.525-0.997) were associated with LN in dominant model. 20497632

2010

dbSNP: rs11203368
rs11203368
0.010 GeneticVariation BEFREE Carriage of minor alleles of five other SNPs (rs11203366, rs11203367, rs874881, rs2240340, and rs11203368) was associated with increased occurrence of LN and hypertension. 30269634

2019

dbSNP: rs7708392
rs7708392
0.020 GeneticVariation BEFREE Comparing cases of systemic lupus erythematosus with nephritis and cases of systemic lupus erythematosus without nephritis revealed strong associations with lupus nephritis at rs7708392 in European Americans and rs4958881 in African Americans. 23970121

2013

dbSNP: rs4958881
rs4958881
0.010 GeneticVariation BEFREE Comparing cases of systemic lupus erythematosus with nephritis and cases of systemic lupus erythematosus without nephritis revealed strong associations with lupus nephritis at rs7708392 in European Americans and rs4958881 in African Americans. 23970121

2013

dbSNP: rs1143679
rs1143679
0.020 GeneticVariation BEFREE Conclusion CD11b rs1143679 appears to be associated with risk for SLE in the Han Chinese population, and may play an important role in the development of lupus nephritis. 29207897

2018

dbSNP: rs17008504
rs17008504
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs2271100
rs2271100
AGA
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs6056923
rs6056923
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs1391441
rs1391441
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs3824662
rs3824662
0.010 GeneticVariation BEFREE GATA3 rs3824662 is not associated with susceptibility to SLE either in adult or in pediatric patients; however, in pSLE patients, the heterozygous AC genotype could be considered a risk factor for LN. 30301440

2018

dbSNP: rs6478109
rs6478109
0.010 GeneticVariation BEFREE Genotypes distribution of rs6478109, rs7848647 were strongly related to lupus nephritis within SLE (p = 0.004, p = 0.011), respectively. 31081141

2019

dbSNP: rs7848647
rs7848647
0.010 GeneticVariation BEFREE Genotypes distribution of rs6478109, rs7848647 were strongly related to lupus nephritis within SLE (p = 0.004, p = 0.011), respectively. 31081141

2019

dbSNP: rs1799964
rs1799964
0.010 GeneticVariation BEFREE Here, we aimed to examine whether the TNF -238G/A, -308G/A, -376G/A (rs1800750), and -1031T/C (rs1799964) polymorphisms confer SLE or lupus nephritis (LN) susceptibility in a Mexican population. 29611038

2018

dbSNP: rs2275913
rs2275913
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016

dbSNP: rs763780
rs763780
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016

dbSNP: rs2397084
rs2397084
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016

dbSNP: rs11889341
rs11889341
0.010 GeneticVariation BEFREE In the case-control analysis of cohort I, four highly linked SNPs in STAT4 were associated with lupus nephritis with genome wide significance with p = 3.7 × 10(-9), OR 2.20 for the best SNP rs11889341. 24386384

2013