Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs10127939
rs10127939
0.010 GeneticVariation BEFREE The low-binding haplotypes formed by 66L/R/H and 176F confer enhanced risk of lupus nephritis in African Americans. 24782186

2014

dbSNP: rs1061170
rs1061170
CFH
0.010 GeneticVariation BEFREE There was a significantly higher ratio of CC/CT genotypes of rs1061170 in lupus nephritis patients with class III than in the other two classes (class III vs. class IV vs. class V: 21.0% vs. 9.7% vs. 9.4%; P = .044). 28403670

2017

dbSNP: rs11057864
rs11057864
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs1108131
rs1108131
0.700 GeneticVariation GWASCAT Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus. 26980576

2016

dbSNP: rs11203368
rs11203368
0.010 GeneticVariation BEFREE Carriage of minor alleles of five other SNPs (rs11203366, rs11203367, rs874881, rs2240340, and rs11203368) was associated with increased occurrence of LN and hypertension. 30269634

2019

dbSNP: rs1143679
rs1143679
0.020 GeneticVariation BEFREE Conclusion CD11b rs1143679 appears to be associated with risk for SLE in the Han Chinese population, and may play an important role in the development of lupus nephritis. 29207897

2018

dbSNP: rs1143679
rs1143679
0.020 GeneticVariation BEFREE Our meta-analyses confirm that the ITGAM rs1143679 polymorphism is associated with SLE susceptibility in different ethnic groups and demonstrate that the polymorphism is associated with LN in European. 25315704

2015

dbSNP: rs114580964
rs114580964
0.010 GeneticVariation BEFREE We discovered five independent risk variants for LN within the MHC region, including <i>HLA-DRβ1</i> amino acid 11 (<i>P</i><sub>omnibus</sub><0.001), <i>HLA-DQβ1</i> amino acid 45 (<i>P</i><0.001; odds ratio, 0.58; 95% confidence interval, 0.52 to 0.65), <i>HLA-A</i> amino acid 156 (<i>P</i><sub>omnibus</sub><0.001), <i>HLA-DPβ1</i> amino acid 76 (<i>P</i><sub>omnibus</sub><0.001), and a missense variant in <i>PRRC2A</i> (rs114580964; <i>P</i><0.001; odds ratio, 0.38; 95% confidence interval, 0.30 to 0.49) at genome-wide significance. 28754791

2017

dbSNP: rs117026326
rs117026326
0.010 GeneticVariation BEFREE Patients carrying genotype TT of rs117026326 had lower 24-hour urinary total protein (24 hours UTP, g/24 hours), 24-hour urinary protein level (g/L·24 hours), lower frequency of the proteinuria and lupus nephritis (LN). 31374066

2019

dbSNP: rs11889341
rs11889341
0.010 GeneticVariation BEFREE In the case-control analysis of cohort I, four highly linked SNPs in STAT4 were associated with lupus nephritis with genome wide significance with p = 3.7 × 10(-9), OR 2.20 for the best SNP rs11889341. 24386384

2013

dbSNP: rs11893826
rs11893826
0.010 GeneticVariation BEFREE A total of 111 patients with SLE (50 with SLE without nephritis, 55 with LN and 6 with simple urinary sediment abnormalities) and 62 healthy controls (HC) were genotyped for NCX1 rs11893826 (NCX1a) and rs434082 (NCX1b) and ADD2 rs4984 SNPs. 26045217

2015

dbSNP: rs11981433
rs11981433
0.010 GeneticVariation BEFREE We found no association of PON2 SNPs with SLE risk but modest associations were observed with lupus nephritis (rs11981433, rs17876205, rs17876183) and immunologic disorder (rs11981433) in SLE patients (P = 0.013 to 0.042). 21223581

2011

dbSNP: rs1267969615
rs1267969615
ACE
0.010 GeneticVariation BEFREE There was no association between genetic polymorphism of ACE, AGT M235T and AGTR1 A1166C and susceptibility to lupus nephritis, nor histological activity and chronicity indices in renal biopsy among the patients studied. 16047641

2005

dbSNP: rs1364989
rs1364989
T 0.700 GeneticVariation GWASCAT Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. 24925725

2014

dbSNP: rs1391441
rs1391441
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs1456896
rs1456896
0.010 GeneticVariation BEFREE Our results suggest that the rs1456896 A allele is associated with protective susceptibility to LN. 27684961

2017

dbSNP: rs1635564
rs1635564
0.010 GeneticVariation BEFREE Notably, gene dose effects of the rs1635564 variant allele were observed for SLE (p = 0.005) and LN (p = 0.01). 30269634

2019

dbSNP: rs17008504
rs17008504
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs172378
rs172378
0.010 GeneticVariation BEFREE These results support the implication of the G allele in rs172378 as a risk factor for lupus nephritis in a homozygous status, at least for a Bulgarian population. 25326229

2015

dbSNP: rs1799964
rs1799964
0.010 GeneticVariation BEFREE Here, we aimed to examine whether the TNF -238G/A, -308G/A, -376G/A (rs1800750), and -1031T/C (rs1799964) polymorphisms confer SLE or lupus nephritis (LN) susceptibility in a Mexican population. 29611038

2018

dbSNP: rs2004640
rs2004640
0.010 GeneticVariation BEFREE The results suggested that the rs2004640 T allele was associated with susceptibility to lupus nephritis and that the IRF5 polymorphism analyzed did not seem to be implicated in the pathology and clinical manifestation of lupus nephritis in the Chinese population. 21040166

2010

dbSNP: rs2157257
rs2157257
0.010 GeneticVariation BEFREE Multiple peaks of association exceeding a Bonferroni corrected P-value of P < 2.03 × 10(-3) were observed between LN and MYH9 in EAs (N = 4620), with the most pronounced association at rs2157257 (P = 4.7 × 10(-4), odds ratio (OR) = 1.205). 22189356

2012

dbSNP: rs2246614
rs2246614
0.010 GeneticVariation BEFREE Additionally, rs4963128 and rs2246614 were correlated with a variety of clinical subphenotypes, such as lupus nephritis, arthritis, and the production of anti-SSA/B autoantibodies, despite a lack of significant association between these two SNPs and SLE disease susceptibility in general. 21167895

2011

dbSNP: rs2271100
rs2271100
AGA
0.010 GeneticVariation BEFREE Four trans-eSNPs were observed to be associated with susceptibility to LN (P < 0.05), including ANKRD50 rs17008504, AGA rs2271100, PAK7 rs6056923, and TET2 rs1391441, while seven other trans-eSNPs showed marginal significant associations (0.05 < P < 0.1). 26509176

2015

dbSNP: rs2275913
rs2275913
0.010 GeneticVariation BEFREE IL-17A rs2275913, IL-17F rs763780 and rs2397084 are not related to the LN development, SLE disease activity or overall survival. 26515887

2016