DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1050501	FCGR2B	0.732	0.440	1	161674008	missense variant	T/C	snv	0.16	0.19	15
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	72
rs1061622	TNFRSF1B	0.633	0.760	1	12192898	missense variant	T/G	snv	0.22	0.22	33
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs1217393	AP4B1-AS1	0.851	0.160	1	113891324	intron variant	G/A	snv		0.42	4
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs1234315	TNFSF4	0.807	0.400	1	173209324	upstream gene variant	C/T	snv		0.57	6
rs1308699981	FCGR3A	0.807	0.440	1	161543085	missense variant	G/A	snv	4.0E-06		7
rs1748033	PADI4	0.925	0.120	1	17336167	missense variant	T/C;G	snv	0.63; 4.0E-06		2
rs17581834	IL19	0.882	0.120	1	206802774	intron variant	T/C	snv		4.2E-02	3
rs17849502	NCF2 ; SMG7	0.827	0.240	1	183563445	missense variant	G/A;C;T	snv	4.0E-06; 4.0E-06; 3.4E-02		5
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800890	IL19	0.658	0.400	1	206776020	intron variant	A/T	snv		0.32	29
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1801131	MTHFR	0.535	0.840	1	11794419	missense variant	T/G	snv	0.29	0.26	93
rs1801133	MTHFR	0.472	0.880	1	11796321	missense variant	G/A	snv	0.31	0.27	174
rs1801274	FCGR2A	0.597	0.800	1	161509955	missense variant	A/C;G	snv	4.0E-06; 0.48		46
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs1884444	IL23R ; C1orf141	0.637	0.600	1	67168129	missense variant	G/T	snv	0.52	0.51	34
rs200215055	FCGR3B	0.742	0.400	1	161626196	missense variant	C/A;G;T	snv	1.5E-03; 1.2E-05; 4.0E-06		11
rs2422345	LOC100506023 ; TNFSF4	0.851	0.160	1	173368608	upstream gene variant	G/A	snv		0.63	4
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs33996649	PTPN22 ; AP4B1-AS1	0.732	0.400	1	113852067	missense variant	C/T	snv	1.7E-02	1.6E-02	13
rs3766379	CD244	0.851	0.320	1	160837925	intron variant	T/C	snv		0.57	4