Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs5844572
MIF ; MIF-AS1
0.752 0.360 22 23893562 intron variant -/ATTC delins 11
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs1341239
PRL ; CASC15
0.776 0.360 6 22303975 intron variant A/C snv 0.65 8
rs437179
SKIV2L ; CYP21A2
0.882 0.160 6 31961237 missense variant A/C snv 0.76 0.78 3
rs6568431
ATG5
0.790 0.320 6 106140931 intron variant A/C snv 0.61 7
rs6659932
IL12RB2
0.827 0.240 1 67336688 intron variant A/C snv 0.81 5
rs729302 0.827 0.160 7 128928906 intergenic variant A/C snv 0.28 6
rs12531711
TNPO3
0.827 0.200 7 128977412 intron variant A/C;G snv 5
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 46
rs1893592
UBASH3A
0.742 0.280 21 42434957 missense variant A/C;G snv 0.27; 8.0E-06 12
rs2227981
LOC105373977 ; PDCD1
0.763 0.400 2 241851121 synonymous variant A/C;G snv 1.6E-04; 0.63 12
rs9275428 0.925 0.120 6 32703201 downstream gene variant A/C;G snv 2
rs854560
PON1
0.513 0.800 7 95316772 missense variant A/C;G;N;T snv 0.29 113
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs396991
FCGR3A
0.742 0.480 1 161544752 missense variant A/C;G;T snv 0.33; 4.1E-06 14
rs179008
TLR7
0.763 0.360 X 12885540 missense variant A/C;T snv 0.18 0.18 14
rs9138
SPP1
0.776 0.360 4 87983190 3 prime UTR variant A/C;T snv 12
rs1059702
IRAK1
0.807 0.280 X 154018741 missense variant A/G snv 0.72 7
rs1077393
BAG6
0.882 0.200 6 31642752 non coding transcript exon variant A/G snv 0.44 3
rs10818488
C5-OT1
0.776 0.360 9 120942809 regulatory region variant A/G snv 0.51 8
rs11066301
PTPN11
0.827 0.200 12 112433568 intron variant A/G snv 0.30 12
rs11229
PRRC2A
0.851 0.280 6 31635993 synonymous variant A/G snv 0.14 0.17 6
rs1150753
TNXB
0.925 0.120 6 32092090 intron variant A/G snv 6.3E-02 2
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs1270942
CFB ; CYP21A2
0.742 0.440 6 31951083 non coding transcript exon variant A/G snv 7.5E-02 11