DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs17266594	BANK1	0.807	0.280	4	101829765	intron variant	T/C	snv	0.25	0.27	7
rs10516487	BANK1	0.752	0.360	4	101829919	missense variant	G/A;T	snv	0.26; 8.0E-06		11
rs3733197	BANK1	0.742	0.320	4	101918130	missense variant	G/A	snv	0.31	0.30	13
rs3844283	IRAK2	0.882	0.200	3	10222796	missense variant	C/G	snv	0.37	0.35	3
rs708035	IRAK2	0.925	0.120	3	10234479	missense variant	T/A	snv	0.73	0.70	2
rs7258015	ICAM3	0.925	0.120	19	10338682	missense variant	T/C	snv	0.22	0.20	2
rs11085725	TYK2	0.851	0.160	19	10351837	intron variant	C/T	snv		0.24	4
rs34536443	TYK2	0.667	0.400	19	10352442	missense variant	G/C	snv	2.7E-02	2.8E-02	25
rs35018800	TYK2	0.790	0.160	19	10354167	missense variant	G/A	snv	4.6E-03	4.9E-03	9
rs548234	ATG5	0.763	0.360	6	106120159	intron variant	C/T	snv		0.76	11
rs802791	ATG5	0.851	0.160	6	106121395	intron variant	T/C	snv		0.75	4
rs6568431	ATG5	0.790	0.320	6	106140931	intron variant	A/C	snv		0.61	7
rs3087456	CIITA ; LOC105371080	0.742	0.480	16	10877045	intron variant	G/A	snv		0.53	14
rs4774	CIITA	0.807	0.240	16	10906991	missense variant	G/C	snv	0.30	0.28	7
rs549908	IL18	0.752	0.440	11	112150193	synonymous variant	T/A;G	snv	4.2E-06; 0.29		10
rs187238	IL18	0.602	0.680	11	112164265	intron variant	C/A;G	snv			48
rs1946518	IL18	0.602	0.760	11	112164735	intron variant	T/G	snv		0.60	46
rs11066301	PTPN11	0.827	0.200	12	112433568	intron variant	A/G	snv		0.30	12
rs6679677	PHTF1	0.653	0.320	1	113761186	upstream gene variant	C/A	snv		6.7E-02	26
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs33996649	PTPN22 ; AP4B1-AS1	0.732	0.400	1	113852067	missense variant	C/T	snv	1.7E-02	1.6E-02	13
rs1217393	AP4B1-AS1	0.851	0.160	1	113891324	intron variant	G/A	snv		0.42	4
rs3810936	TNFSF15	0.742	0.320	9	114790605	synonymous variant	T/C	snv	0.71	0.75	12
rs6478109	TNFSF15	0.752	0.320	9	114806486	upstream gene variant	A/G	snv		0.74	12
rs7848647	TNFSF15	0.732	0.320	9	114806766	upstream gene variant	T/C	snv		0.74	13