Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10036748
TNIP1
0.752 0.360 5 151078585 intron variant C/A;T snv 11
rs1063320
HLA-G
0.752 0.360 6 29830972 3 prime UTR variant C/G;T snv 12
rs1544410
VDR
0.542 0.760 12 47846052 intron variant C/A;G;T snv 78
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 46
rs1805192
PPARG
0.510 0.840 3 12379739 missense variant C/G snv 121
rs187238
IL18
0.602 0.680 11 112164265 intron variant C/A;G snv 48
rs2069705
IFNG-AS1 ; IFNG
0.695 0.440 12 68161231 intron variant G/A;C snv 19
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs2280964
CXCR3
0.882 0.200 X 71618204 intron variant C/A;G;T snv 3
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs3129890 0.827 0.280 6 32446496 downstream gene variant T/A;C snv 5
rs3743930
MEFV
0.611 0.720 16 3254626 missense variant C/G;T snv 7.1E-02 43
rs3775291
TLR3
0.602 0.640 4 186082920 missense variant C/G;T snv 1.2E-04; 0.28 51
rs396991
FCGR3A
0.742 0.480 1 161544752 missense variant A/C;G;T snv 0.33; 4.1E-06 14
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs549908
IL18
0.752 0.440 11 112150193 synonymous variant T/A;G snv 4.2E-06; 0.29 10
rs555743307
IL4R
0.695 0.440 16 27342243 missense variant G/A;T snv 3.6E-05; 2.9E-04 20
rs759834365
BDNF-AS ; BDNF
0.448 0.760 11 27658456 missense variant C/T snv 1.2E-05 237
rs909253
LTA ; LOC100287329
0.641 0.600 6 31572536 intron variant A/G;T snv 34
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs745738344
TNF
0.653 0.600 6 31576786 synonymous variant G/A snv 1.6E-05 1.4E-05 28
rs10917661
FCGR2B
0.882 0.160 1 161671427 stop gained C/T snv 2.8E-05 3
rs2187668
LOC107986589 ; HLA-DQA2 ; HLA-DQA1
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03 20
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 98