DisGeNET - a database of gene-disease associations

List of shared variants

Asthma, C0004096

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs12232497		0.701	0.360	17	39883866	intergenic variant	T/C	snv		0.35	18
rs2254546		0.807	0.400	8	11486171	upstream gene variant	A/G	snv		0.83	6
rs2327832		0.790	0.320	6	137651931	intergenic variant	A/G	snv		0.16	10
rs3129890		0.827	0.280	6	32446496	downstream gene variant	T/A;C	snv			5
rs1800625	AGER ; PBX2	0.641	0.680	6	32184665	upstream gene variant	A/G	snv		0.15	39
rs2476601	AP4B1-AS1 ; PTPN22	0.498	0.800	1	113834946	missense variant	A/G	snv	0.93	0.93	121
rs10774625	ATXN2	0.763	0.320	12	111472415	intron variant	A/G	snv		0.66	13
rs653178	ATXN2	0.672	0.600	12	111569952	intron variant	C/T	snv		0.67	41
rs759834365	BDNF-AS ; BDNF	0.448	0.760	11	27658456	missense variant	C/T	snv	1.2E-05		237
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	272
rs1883832	CD40	0.581	0.680	20	46118343	5 prime UTR variant	T/C	snv	0.75	0.80	52
rs1205	CRP	0.602	0.680	1	159712443	3 prime UTR variant	C/T	snv		0.30	46
rs231775	CTLA4	0.504	0.720	2	203867991	missense variant	A/G;T	snv	0.42; 4.0E-06		115
rs2280964	CXCR3	0.882	0.200	X	71618204	intron variant	C/A;G;T	snv			3
rs1801274	FCGR2A	0.597	0.800	1	161509955	missense variant	A/C;G	snv	4.0E-06; 0.48		46
rs1050501	FCGR2B	0.732	0.440	1	161674008	missense variant	T/C	snv	0.16	0.19	15
rs10917661	FCGR2B	0.882	0.160	1	161671427	stop gained	C/T	snv		2.8E-05	3
rs396991	FCGR3A	0.742	0.480	1	161544752	missense variant	A/C;G;T	snv	0.33; 4.1E-06		14
rs7528684	FCRL3	0.752	0.560	1	157701026	upstream gene variant	A/G	snv		0.57	13
rs1695	GSTP1	0.457	0.880	11	67585218	missense variant	A/G	snv	0.34	0.36	188
rs7192	HLA-DRA	0.827	0.200	6	32443869	missense variant	T/G	snv	0.64	0.61	7
rs1063320	HLA-G	0.752	0.360	6	29830972	3 prime UTR variant	C/G;T	snv			12
rs1707	HLA-G	0.925	0.120	6	29830833	3 prime UTR variant	C/T	snv		0.87	2
rs1990760	IFIH1	0.672	0.480	2	162267541	missense variant	C/T	snv	0.50	0.45	33
rs2069705	IFNG-AS1 ; IFNG	0.695	0.440	12	68161231	intron variant	G/A;C	snv			19