DisGeNET - a database of gene-disease associations

List of shared variants

Inflammatory Bowel Diseases, C0021390

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1990760	IFIH1	0.672	0.480	2	162267541	missense variant	C/T	snv	0.50	0.45	33
rs1457092	MYO9B	0.790	0.320	19	17193427	intron variant	C/A	snv		0.44	8
rs2305764	MYO9B	0.776	0.360	19	17203024	non coding transcript exon variant	G/A	snv	0.52	0.50	10
rs1517352	STAT4	0.851	0.160	2	191066738	intron variant	A/C	snv		0.45	5
rs7574865	STAT4	0.574	0.720	2	191099907	intron variant	T/G	snv		0.79	59
rs3024505		0.790	0.320	1	206766559	upstream gene variant	G/A	snv		0.11	10
rs3024493	IL19 ; IL10	0.776	0.280	1	206770623	intron variant	C/A;T	snv		0.11	9
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs4676410	GPR35	0.716	0.240	2	240624322	intron variant	G/A	snv		0.26	17
rs1051792	MICA	0.851	0.240	6	31411200	missense variant	G/A	snv	0.34	0.35	5
rs1800629	TNF	0.472	0.920	6	31575254	upstream gene variant	G/A	snv	0.12	0.14	169
rs1127354	ITPA	0.667	0.400	20	3213196	missense variant	C/A;G	snv	7.5E-02		26
rs9271366		0.807	0.240	6	32619077	intergenic variant	G/A	snv		0.86	9
rs2187668	LOC107986589 ; HLA-DQA2 ; HLA-DQA1	0.701	0.480	6	32638107	intron variant	C/T	snv		3.3E-03	20
rs3746444	MIR499A ; MIR499B ; MYH7B ; LOC107985393	0.514	0.760	20	34990448	mature miRNA variant	A/G	snv	0.20	0.19	105
rs1188383936	F2	0.524	0.760	11	46725976	missense variant	C/T	snv	8.0E-06		102
rs731236	VDR	0.542	0.760	12	47844974	synonymous variant	A/G	snv	0.33	0.34	81
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs1456896		0.882	0.200	7	50264865	upstream gene variant	C/T	snv		0.67	5
rs2275913	IL17A	0.514	0.760	6	52186235	upstream gene variant	G/A	snv		0.28	105
rs352140	TLR9	0.630	0.680	3	52222681	synonymous variant	C/A;G;T	snv	2.0E-05; 0.49		42
rs352139	TLR9	0.732	0.320	3	52224356	intron variant	T/C	snv	0.51	0.54	18